Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
TNFRSF4P43489 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.8
TNFRSF4P43489 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
TNFRSF4P43489 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.08■□□□□ 0.8
TNFRSF4P43489 LINC01568-207ENST00000641790 1380 ntBASIC20.08■□□□□ 0.8
TNFRSF4P43489 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TNFRSF4P43489 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.07■□□□□ 0.8
TNFRSF4P43489 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC20.07■□□□□ 0.8
TNFRSF4P43489 FSCN1P1-201ENST00000568912 1481 ntBASIC20.07■□□□□ 0.8
TNFRSF4P43489 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
TNFRSF4P43489 STK25-204ENST00000405585 1643 ntTSL 2 BASIC20.07■□□□□ 0.8
TNFRSF4P43489 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
TNFRSF4P43489 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
TNFRSF4P43489 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
TNFRSF4P43489 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20.07■□□□□ 0.8
TNFRSF4P43489 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.07■□□□□ 0.8
TNFRSF4P43489 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
TNFRSF4P43489 KRT18P16-201ENST00000510337 1294 ntBASIC20.07■□□□□ 0.8
TNFRSF4P43489 AC026271.3-201ENST00000571884 352 ntBASIC20.07■□□□□ 0.8
TNFRSF4P43489 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC20.07■□□□□ 0.8
TNFRSF4P43489 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TNFRSF4P43489 AC092865.7-201ENST00000641832 219 ntBASIC20.07■□□□□ 0.8
TNFRSF4P43489 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TNFRSF4P43489 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TNFRSF4P43489 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.07■□□□□ 0.8
TNFRSF4P43489 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TNFRSF4P43489 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TNFRSF4P43489 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
TNFRSF4P43489 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
TNFRSF4P43489 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TNFRSF4P43489 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
TNFRSF4P43489 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TNFRSF4P43489 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.06■□□□□ 0.8
TNFRSF4P43489 TUBB8P6-201ENST00000436895 1288 ntBASIC20.06■□□□□ 0.8
TNFRSF4P43489 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC20.06■□□□□ 0.8
TNFRSF4P43489 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TNFRSF4P43489 RN7SL850P-201ENST00000579959 291 ntBASIC20.06■□□□□ 0.8
TNFRSF4P43489 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC20.06■□□□□ 0.8
TNFRSF4P43489 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TNFRSF4P43489 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
TNFRSF4P43489 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TNFRSF4P43489 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TNFRSF4P43489 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
TNFRSF4P43489 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
TNFRSF4P43489 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TNFRSF4P43489 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
TNFRSF4P43489 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.06■□□□□ 0.8
TNFRSF4P43489 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.05■□□□□ 0.8
TNFRSF4P43489 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
TNFRSF4P43489 KRT18P22-201ENST00000402024 1347 ntBASIC20.05■□□□□ 0.8
TNFRSF4P43489 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TNFRSF4P43489 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TNFRSF4P43489 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
TNFRSF4P43489 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TNFRSF4P43489 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TNFRSF4P43489 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
TNFRSF4P43489 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TNFRSF4P43489 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TNFRSF4P43489 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20.05■□□□□ 0.8
TNFRSF4P43489 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC20.05■□□□□ 0.8
TNFRSF4P43489 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.05■□□□□ 0.8
TNFRSF4P43489 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC20.05■□□□□ 0.8
TNFRSF4P43489 GRAMD4P8-201ENST00000605465 1115 ntBASIC20.05■□□□□ 0.8
TNFRSF4P43489 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC20.05■□□□□ 0.8
TNFRSF4P43489 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
TNFRSF4P43489 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
TNFRSF4P43489 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TNFRSF4P43489 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TNFRSF4P43489 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
TNFRSF4P43489 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TNFRSF4P43489 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
TNFRSF4P43489 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TNFRSF4P43489 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TNFRSF4P43489 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TNFRSF4P43489 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.05■□□□□ 0.8
TNFRSF4P43489 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC20.04■□□□□ 0.8
TNFRSF4P43489 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.04■□□□□ 0.8
TNFRSF4P43489 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TNFRSF4P43489 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
TNFRSF4P43489 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TNFRSF4P43489 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC20.04■□□□□ 0.8
TNFRSF4P43489 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
TNFRSF4P43489 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
TNFRSF4P43489 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC20.04■□□□□ 0.8
TNFRSF4P43489 AL390955.1-201ENST00000428694 934 ntBASIC20.04■□□□□ 0.8
TNFRSF4P43489 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.04■□□□□ 0.8
TNFRSF4P43489 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC20.04■□□□□ 0.8
TNFRSF4P43489 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC20.04■□□□□ 0.8
TNFRSF4P43489 P4HB-223ENST00000576390 439 ntTSL 4 BASIC20.04■□□□□ 0.8
TNFRSF4P43489 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
TNFRSF4P43489 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
TNFRSF4P43489 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
TNFRSF4P43489 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC20.04■□□□□ 0.8
TNFRSF4P43489 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TNFRSF4P43489 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TNFRSF4P43489 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TNFRSF4P43489 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TNFRSF4P43489 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.04■□□□□ 0.8
TNFRSF4P43489 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TNFRSF4P43489 CYP2D8P-201ENST00000433633 1490 ntBASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms