Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 TEK-202ENST00000406359 3935 ntTSL 2 BASIC6.45□□□□□ -1.38
SOX3P41225 PSG2-202ENST00000406487 1538 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
SOX3P41225 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC6.45□□□□□ -1.38
SOX3P41225 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC6.45□□□□□ -1.38
SOX3P41225 IL2RA-203ENST00000379959 3176 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
SOX3P41225 MUC5AC-201ENST00000621226 17448 ntAPPRIS P1 TSL 5 BASIC6.45□□□□□ -1.38
SOX3P41225 RNF14-204ENST00000394519 4173 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
SOX3P41225 HSPD1P4-201ENST00000547203 1702 ntBASIC6.45□□□□□ -1.38
SOX3P41225 PLXNA4-201ENST00000321063 13061 ntAPPRIS P1 TSL 5 BASIC6.45□□□□□ -1.38
SOX3P41225 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
SOX3P41225 RRS1-AS1-201ENST00000499642 4366 ntTSL 2 BASIC6.45□□□□□ -1.38
SOX3P41225 LARP1B-203ENST00000432347 2707 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
SOX3P41225 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC6.45□□□□□ -1.38
SOX3P41225 SELP-203ENST00000367788 2427 ntAPPRIS ALT2 TSL 5 BASIC6.45□□□□□ -1.38
SOX3P41225 SLC3A1-206ENST00000409740 1418 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
SOX3P41225 AL590762.1-201ENST00000391782 432 ntBASIC6.45□□□□□ -1.38
SOX3P41225 AL359715.1-201ENST00000404330 555 ntBASIC6.45□□□□□ -1.38
SOX3P41225 AP001610.2-201ENST00000415820 422 ntTSL 3 BASIC6.45□□□□□ -1.38
SOX3P41225 AC007365.2-201ENST00000428806 458 ntBASIC6.45□□□□□ -1.38
SOX3P41225 AC018804.1-201ENST00000430381 618 ntBASIC6.45□□□□□ -1.38
SOX3P41225 AC009948.1-203ENST00000450044 793 ntTSL 3 BASIC6.45□□□□□ -1.38
SOX3P41225 AL157896.1-201ENST00000451617 790 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
SOX3P41225 AL391422.2-202ENST00000454396 347 ntTSL 5 BASIC6.45□□□□□ -1.38
SOX3P41225 RPL34P34-201ENST00000465389 354 ntBASIC6.45□□□□□ -1.38
SOX3P41225 RPS4XP23-201ENST00000487801 237 ntBASIC6.45□□□□□ -1.38
SOX3P41225 PFN2-213ENST00000494827 793 ntTSL 4 BASIC6.45□□□□□ -1.38
SOX3P41225 KCNU1-202ENST00000518904 334 ntTSL 2 BASIC6.45□□□□□ -1.38
SOX3P41225 CASC11-203ENST00000519071 791 ntTSL 3 BASIC6.45□□□□□ -1.38
SOX3P41225 IGLVV-66-201ENST00000523818 341 ntBASIC6.45□□□□□ -1.38
SOX3P41225 AC021820.1-201ENST00000525564 808 ntBASIC6.45□□□□□ -1.38
SOX3P41225 AP001107.4-201ENST00000533576 539 ntTSL 3 BASIC6.45□□□□□ -1.38
SOX3P41225 LRRC36-205ENST00000563189 2104 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
SOX3P41225 AC068152.1-203ENST00000570314 254 ntTSL 3 BASIC6.45□□□□□ -1.38
SOX3P41225 AC011498.1-203ENST00000589066 359 ntTSL 3 BASIC6.45□□□□□ -1.38
SOX3P41225 AL161457.2-206ENST00000592778 802 ntTSL 5 BASIC6.45□□□□□ -1.38
SOX3P41225 PDE4DIP-241ENST00000616206 874 ntTSL 2 BASIC6.45□□□□□ -1.38
SOX3P41225 AC004943.1-203ENST00000624370 1074 ntBASIC6.45□□□□□ -1.38
SOX3P41225 AC134980.1-214ENST00000638815 687 ntTSL 5 BASIC6.45□□□□□ -1.38
SOX3P41225 AL596275.2-208ENST00000641192 594 ntBASIC6.45□□□□□ -1.38
SOX3P41225 AC119674.1-217ENST00000641942 1086 ntBASIC6.45□□□□□ -1.38
SOX3P41225 RNF145-211ENST00000521606 2658 ntTSL 2 BASIC6.45□□□□□ -1.38
SOX3P41225 OVAAL-201ENST00000442621 1489 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
SOX3P41225 RAB5B-201ENST00000360299 5340 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
SOX3P41225 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
SOX3P41225 ZNF573-201ENST00000339503 2014 ntTSL 5 BASIC6.45□□□□□ -1.38
SOX3P41225 AL162456.1-201ENST00000634535 2006 ntBASIC6.45□□□□□ -1.38
SOX3P41225 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC6.45□□□□□ -1.38
SOX3P41225 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC6.45□□□□□ -1.38
SOX3P41225 RSC1A1-201ENST00000345034 1854 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
SOX3P41225 FBLN5-205ENST00000556154 1875 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
SOX3P41225 AC001226.2-204ENST00000638101 2645 ntAPPRIS ALT2 TSL 5 BASIC6.45□□□□□ -1.38
SOX3P41225 C1D-202ENST00000407324 1379 ntTSL 3 BASIC6.44□□□□□ -1.38
SOX3P41225 LRFN5-203ENST00000554120 2121 ntAPPRIS ALT2 TSL 5 BASIC6.44□□□□□ -1.38
SOX3P41225 BLNK-203ENST00000413476 1599 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
SOX3P41225 CEP97-206ENST00000494050 2870 ntAPPRIS ALT2 TSL 2 BASIC6.44□□□□□ -1.38
SOX3P41225 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
SOX3P41225 LYSMD3-201ENST00000315948 4259 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
SOX3P41225 ZBTB21-205ENST00000398511 5608 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
SOX3P41225 UGT2B27P-201ENST00000505092 1620 ntBASIC6.44□□□□□ -1.38
SOX3P41225 NCAPG2-202ENST00000409339 5253 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
SOX3P41225 BCL2L14-201ENST00000266434 2039 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
SOX3P41225 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
SOX3P41225 OR52D1-201ENST00000322641 1065 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
SOX3P41225 RNA5SP172-201ENST00000365061 118 ntBASIC6.44□□□□□ -1.38
SOX3P41225 NOX4-203ENST00000375979 816 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
SOX3P41225 AL136100.1-201ENST00000407696 330 ntBASIC6.44□□□□□ -1.38
SOX3P41225 RN7SKP148-201ENST00000410179 275 ntBASIC6.44□□□□□ -1.38
SOX3P41225 AC007091.1-201ENST00000412563 566 ntTSL 5 BASIC6.44□□□□□ -1.38
SOX3P41225 AC009743.1-201ENST00000415774 610 ntTSL 5 BASIC6.44□□□□□ -1.38
SOX3P41225 RPSAP41-201ENST00000439695 860 ntBASIC6.44□□□□□ -1.38
SOX3P41225 PGM5P3-AS1-202ENST00000442069 615 ntTSL 2 BASIC6.44□□□□□ -1.38
SOX3P41225 AF015262.1-201ENST00000455028 698 ntTSL 3 BASIC6.44□□□□□ -1.38
SOX3P41225 RPS14P8-201ENST00000478778 369 ntBASIC6.44□□□□□ -1.38
SOX3P41225 GLYAT-203ENST00000529732 1070 ntAPPRIS P1 TSL 5 BASIC6.44□□□□□ -1.38
SOX3P41225 PCED1B-AS1-202ENST00000547600 523 ntTSL 3 BASIC6.44□□□□□ -1.38
SOX3P41225 AC027288.1-201ENST00000548359 816 ntTSL 3 BASIC6.44□□□□□ -1.38
SOX3P41225 AC089984.3-201ENST00000552838 363 ntBASIC6.44□□□□□ -1.38
SOX3P41225 LINC02308-201ENST00000555001 637 ntTSL 2 BASIC6.44□□□□□ -1.38
SOX3P41225 AC068831.6-201ENST00000560522 795 ntTSL 3 BASIC6.44□□□□□ -1.38
SOX3P41225 AL133297.1-201ENST00000568149 404 ntTSL 2 BASIC6.44□□□□□ -1.38
SOX3P41225 AC241377.2-201ENST00000612313 553 ntTSL 4 BASIC6.44□□□□□ -1.38
SOX3P41225 MIR663AHG-237ENST00000615682 1030 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
SOX3P41225 AC011471.4-201ENST00000638271 216 ntBASIC6.44□□□□□ -1.38
SOX3P41225 RASGRP3-203ENST00000407811 4210 ntAPPRIS ALT1 TSL 1 (best) BASIC6.44□□□□□ -1.38
SOX3P41225 CTXN3-201ENST00000379445 1660 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
SOX3P41225 SGO1-AS1-205ENST00000634837 1677 ntTSL 5 BASIC6.44□□□□□ -1.38
SOX3P41225 OAT-208ENST00000539214 1864 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
SOX3P41225 HEPH-203ENST00000419594 3694 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
SOX3P41225 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
SOX3P41225 DTNA-226ENST00000596745 1508 ntTSL 2 BASIC6.44□□□□□ -1.38
SOX3P41225 ANKS4B-201ENST00000311620 4352 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
SOX3P41225 SSXP3-201ENST00000442971 1300 ntBASIC6.44□□□□□ -1.38
SOX3P41225 LINC01677-204ENST00000635342 1329 ntTSL 5 BASIC6.44□□□□□ -1.38
SOX3P41225 CA1-222ENST00000523953 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
SOX3P41225 BTN3A2-201ENST00000356386 3017 ntAPPRIS P3 TSL 5 BASIC6.44□□□□□ -1.38
SOX3P41225 LINGO2-202ENST00000379992 3044 ntAPPRIS P1 TSL 5 BASIC6.44□□□□□ -1.38
SOX3P41225 IL20-202ENST00000367098 1553 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
SOX3P41225 KYNU-203ENST00000409512 1576 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
SOX3P41225 FAM111B-201ENST00000343597 3488 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
SOX3P41225 OTX2-AS1-201ENST00000534909 2428 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms