Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 PBRM1-206ENST00000409114 5015 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL5A1P20908 CLSPN-201ENST00000251195 4769 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL5A1P20908 ESRP1-204ENST00000454170 3482 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL5A1P20908 MYOM1-202ENST00000356443 5847 ntAPPRIS P4 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL5A1P20908 AL590065.1-201ENST00000603371 4774 ntBASIC6.48□□□□□ -1.37
COL5A1P20908 ZNF793-208ENST00000588578 4549 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL5A1P20908 EHBP1-203ENST00000405289 3591 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL5A1P20908 SLC36A4-206ENST00000529184 1917 ntTSL 2 BASIC6.48□□□□□ -1.37
COL5A1P20908 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC6.48□□□□□ -1.37
COL5A1P20908 F5-201ENST00000367796 7039 ntAPPRIS ALT2 TSL 5 BASIC6.48□□□□□ -1.37
COL5A1P20908 ZNF14-201ENST00000344099 2949 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL5A1P20908 PIK3R3-202ENST00000372006 5019 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL5A1P20908 IFT80-225ENST00000496589 3073 ntTSL 2 BASIC6.48□□□□□ -1.37
COL5A1P20908 TMEM167A-201ENST00000502346 4630 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL5A1P20908 ZNF438-201ENST00000331737 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL5A1P20908 SNORA51.1-201ENST00000363243 140 ntBASIC6.48□□□□□ -1.37
COL5A1P20908 RNA5SP485-201ENST00000365053 119 ntBASIC6.48□□□□□ -1.37
COL5A1P20908 RNA5SP77-201ENST00000365394 120 ntBASIC6.48□□□□□ -1.37
COL5A1P20908 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
COL5A1P20908 AL451046.1-201ENST00000406097 534 ntBASIC6.48□□□□□ -1.37
COL5A1P20908 AC002127.1-201ENST00000421305 225 ntBASIC6.48□□□□□ -1.37
COL5A1P20908 OSTN-AS1-201ENST00000430375 515 ntTSL 5 BASIC6.48□□□□□ -1.37
COL5A1P20908 AC079763.1-201ENST00000441295 738 ntTSL 3 BASIC6.48□□□□□ -1.37
COL5A1P20908 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC6.48□□□□□ -1.37
COL5A1P20908 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC6.48□□□□□ -1.37
COL5A1P20908 RN7SL101P-201ENST00000496350 279 ntBASIC6.48□□□□□ -1.37
COL5A1P20908 AC104109.1-201ENST00000498563 436 ntBASIC6.48□□□□□ -1.37
COL5A1P20908 LINC01098-201ENST00000507870 1034 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL5A1P20908 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC6.48□□□□□ -1.37
COL5A1P20908 CETN3-206ENST00000522864 738 ntTSL 3 BASIC6.48□□□□□ -1.37
COL5A1P20908 CRYAB-207ENST00000527950 887 ntAPPRIS P1 TSL 5 BASIC6.48□□□□□ -1.37
COL5A1P20908 AC022182.1-202ENST00000529234 580 ntTSL 2 BASIC6.48□□□□□ -1.37
COL5A1P20908 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC6.48□□□□□ -1.37
COL5A1P20908 OFCC1-218ENST00000622909 754 ntAPPRIS ALT2 TSL 5 BASIC6.48□□□□□ -1.37
COL5A1P20908 AL109924.4-201ENST00000623089 670 ntBASIC6.48□□□□□ -1.37
COL5A1P20908 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC6.48□□□□□ -1.37
COL5A1P20908 AL078581.3-201ENST00000627304 744 ntTSL 5 BASIC6.48□□□□□ -1.37
COL5A1P20908 MDM2-202ENST00000258149 12633 ntAPPRIS P2 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL5A1P20908 CASC19-205ENST00000641013 1411 ntBASIC6.48□□□□□ -1.37
COL5A1P20908 ZNF518A-201ENST00000316045 7277 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL5A1P20908 ARMCX3-207ENST00000537169 3318 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL5A1P20908 PTPRR-202ENST00000342084 2037 ntAPPRIS ALT2 TSL 2 BASIC6.48□□□□□ -1.37
COL5A1P20908 METTL14-201ENST00000388822 6669 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL5A1P20908 EIF1-203ENST00000469257 2330 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL5A1P20908 MID1-203ENST00000380780 6195 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL5A1P20908 DMC1-203ENST00000428462 2082 ntTSL 2 BASIC6.47□□□□□ -1.37
COL5A1P20908 ATXN7L1-202ENST00000419735 5417 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL5A1P20908 MORC3-201ENST00000400485 4246 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL5A1P20908 TPMT-201ENST00000309983 3181 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL5A1P20908 TCF4-225ENST00000564999 3590 ntAPPRIS P3 TSL 5 BASIC6.47□□□□□ -1.37
COL5A1P20908 RPL7L1-201ENST00000304734 3769 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL5A1P20908 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC6.47□□□□□ -1.37
COL5A1P20908 TRPM3-212ENST00000396283 3484 ntTSL 5 BASIC6.47□□□□□ -1.37
COL5A1P20908 AC005702.3-201ENST00000585345 1447 ntBASIC6.47□□□□□ -1.37
COL5A1P20908 AL359694.1-201ENST00000403247 604 ntBASIC6.47□□□□□ -1.37
COL5A1P20908 OR2A2-201ENST00000408979 1051 ntAPPRIS P1 BASIC6.47□□□□□ -1.37
COL5A1P20908 MTND6P1-201ENST00000417434 424 ntBASIC6.47□□□□□ -1.37
COL5A1P20908 OR13C7-201ENST00000424348 959 ntAPPRIS P1 BASIC6.47□□□□□ -1.37
COL5A1P20908 GTF3AP6-201ENST00000432585 986 ntBASIC6.47□□□□□ -1.37
COL5A1P20908 NFIA-AS2-203ENST00000438559 1275 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
COL5A1P20908 DNAJA1P5-201ENST00000440278 943 ntBASIC6.47□□□□□ -1.37
COL5A1P20908 AC005017.1-201ENST00000482002 490 ntBASIC6.47□□□□□ -1.37
COL5A1P20908 CBX1-205ENST00000495350 550 ntTSL 2 BASIC6.47□□□□□ -1.37
COL5A1P20908 AC024451.1-201ENST00000508013 779 ntBASIC6.47□□□□□ -1.37
COL5A1P20908 CYCSP25-201ENST00000525280 316 ntBASIC6.47□□□□□ -1.37
COL5A1P20908 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC6.47□□□□□ -1.37
COL5A1P20908 AC069234.2-202ENST00000535720 583 ntTSL 5 BASIC6.47□□□□□ -1.37
COL5A1P20908 AC012555.2-201ENST00000549448 413 ntTSL 3 BASIC6.47□□□□□ -1.37
COL5A1P20908 AC051619.2-201ENST00000559063 397 ntBASIC6.47□□□□□ -1.37
COL5A1P20908 AC092718.4-201ENST00000566639 716 ntBASIC6.47□□□□□ -1.37
COL5A1P20908 AC004232.2-201ENST00000574245 821 ntBASIC6.47□□□□□ -1.37
COL5A1P20908 AC005899.3-201ENST00000580360 271 ntTSL 3 BASIC6.47□□□□□ -1.37
COL5A1P20908 ARFGAP2-230ENST00000629231 213 ntTSL 5 BASIC6.47□□□□□ -1.37
COL5A1P20908 VPS41-202ENST00000310301 5903 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL5A1P20908 ZNF322-201ENST00000415922 4817 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL5A1P20908 AC011447.6-201ENST00000623510 2598 ntBASIC6.47□□□□□ -1.37
COL5A1P20908 SLC7A2-202ENST00000398090 7557 ntAPPRIS P3 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL5A1P20908 FAM168A-201ENST00000064778 7296 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
COL5A1P20908 GPR151-201ENST00000311104 3088 ntAPPRIS P1 BASIC6.47□□□□□ -1.37
COL5A1P20908 MUC3A-203ENST00000483366 9944 ntAPPRIS ALT2 TSL 5 BASIC6.47□□□□□ -1.37
COL5A1P20908 PUM1-204ENST00000373747 5375 ntAPPRIS ALT1 TSL 5 BASIC6.47□□□□□ -1.37
COL5A1P20908 SEC62-201ENST00000337002 6568 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL5A1P20908 NAV2-203ENST00000396085 11000 ntAPPRIS P4 TSL 5 BASIC6.47□□□□□ -1.37
COL5A1P20908 AC124312.1-201ENST00000551312 1325 ntAPPRIS P5 TSL 5 BASIC6.47□□□□□ -1.37
COL5A1P20908 ADGRE4P-202ENST00000600751 2810 ntTSL 5 BASIC6.47□□□□□ -1.37
COL5A1P20908 EIF4G2-205ENST00000525681 3654 ntAPPRIS ALT2 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL5A1P20908 EIF3L-203ENST00000412331 3220 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
COL5A1P20908 GRIA3-204ENST00000541091 2740 ntAPPRIS P5 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL5A1P20908 ZHX3-211ENST00000544979 3933 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
COL5A1P20908 DMTF1-213ENST00000432937 2411 ntTSL 2 BASIC6.46□□□□□ -1.37
COL5A1P20908 AC106886.5-201ENST00000380361 11692 ntAPPRIS P1 TSL 2 BASIC6.46□□□□□ -1.37
COL5A1P20908 SLC25A12-202ENST00000422440 2979 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.37
COL5A1P20908 RPL31P11-201ENST00000426558 1558 ntBASIC6.46□□□□□ -1.37
COL5A1P20908 FDFT1-222ENST00000538689 2289 ntTSL 2 BASIC6.46□□□□□ -1.37
COL5A1P20908 AC015871.3-201ENST00000618835 2261 ntBASIC6.46□□□□□ -1.37
COL5A1P20908 MEIS1-202ENST00000398506 3530 ntTSL 5 BASIC6.46□□□□□ -1.37
COL5A1P20908 AC009135.2-201ENST00000624136 1768 ntBASIC6.46□□□□□ -1.37
COL5A1P20908 ATG2B-202ENST00000359933 13684 ntAPPRIS P1 TSL 5 BASIC6.46□□□□□ -1.37
COL5A1P20908 S100A1-202ENST00000368696 522 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
COL5A1P20908 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC6.46□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 82 ms