Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RPS7P10-201ENST00000464254 603 ntBASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 GLRXP3-201ENST00000470810 321 ntBASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 AP005202.1-201ENST00000489915 867 ntBASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 AC073842.2-201ENST00000494221 572 ntTSL 4 BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 AC122718.2-201ENST00000505325 591 ntBASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 AC146944.3-201ENST00000509969 371 ntBASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 AP001000.1-201ENST00000526843 742 ntBASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 WBP2NL-210ENST00000543212 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 AC011824.1-201ENST00000584863 561 ntTSL 4 BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 MRPL57P3-201ENST00000619218 176 ntBASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 AADACL3-201ENST00000359318 3662 ntAPPRIS P1 TSL 3 BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 NR3C1-205ENST00000415690 3789 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 PLXNA4-201ENST00000321063 13061 ntAPPRIS P1 TSL 5 BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 AC123769.2-201ENST00000624332 5984 ntBASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 AL359263.1-201ENST00000441188 2796 ntBASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 PHLDB2-202ENST00000393925 5543 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 TRAF5-202ENST00000336184 3972 ntAPPRIS P1 TSL 5 BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 CNOT1-216ENST00000569240 7660 ntAPPRIS ALT1 TSL 1 (best) BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 CHD2-208ENST00000626874 7764 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 GRIK1-202ENST00000389124 2712 ntTSL 5 BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 ZG16-201ENST00000400752 3132 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 AC121758.1-201ENST00000557452 3942 ntTSL 2 BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 AC010329.1-201ENST00000593903 8328 ntBASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 TPTE2P2-201ENST00000403471 1466 ntBASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 LINC00861-201ENST00000500989 5330 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 CDH2-202ENST00000399380 3737 ntTSL 2 BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 SPINK5-203ENST00000398454 2915 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 ZNF652-201ENST00000362063 5988 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 GPX6-201ENST00000361902 1712 ntAPPRIS P2 TSL 1 (best) BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 REG1CP-201ENST00000377435 1705 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 GPX6-204ENST00000612264 1709 ntAPPRIS ALT1 TSL 5 BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 AL121985.1-201ENST00000598917 1308 ntTSL 5 BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 CU633906.1-201ENST00000621924 2380 ntTSL 3 BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 TSHZ2-203ENST00000603338 3803 ntTSL 2 BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 TNPO1-204ENST00000506351 3028 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 EIF2S3-201ENST00000253039 2858 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 UTP4-204ENST00000563094 4183 ntTSL 2 BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 AP002026.1-201ENST00000500358 4825 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 NT5C2-203ENST00000404739 3365 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 NUMB-211ENST00000554521 1406 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 AL049697.1-201ENST00000507897 2301 ntAPPRIS P1 TSL 2 BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 ZNF326-203ENST00000370447 9433 ntAPPRIS ALT2 TSL 1 (best) BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 PSD3-218ENST00000523619 8145 ntAPPRIS ALT2 TSL 1 (best) BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 PNPLA4-204ENST00000537427 2559 ntTSL 2 BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 FBXW10-202ENST00000308799 3456 ntAPPRIS ALT2 TSL 2 BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 RAI14-208ENST00000506376 3091 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 AC008147.2-201ENST00000552061 4713 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 RPL7A-202ENST00000323345 891 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 AC006511.2-201ENST00000388966 660 ntBASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 AL391811.1-201ENST00000416908 423 ntTSL 3 BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 AL354794.2-201ENST00000424795 1248 ntBASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 LINC00462-201ENST00000425350 962 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 LINC00687-201ENST00000427835 558 ntTSL 3 BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 KRTAP3-4P-201ENST00000430780 280 ntBASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 LINC01221-201ENST00000432488 662 ntTSL 3 BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 BACH1-IT2-201ENST00000436529 806 ntTSL 5 BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 CFLAR-212ENST00000440180 1198 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 LRTOMT-209ENST00000440313 253 ntTSL 3 BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 AC245291.3-201ENST00000443400 292 ntBASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 TIMM8BP2-201ENST00000445940 251 ntBASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 EEF1B2P3-201ENST00000447718 678 ntBASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 AC010878.1-201ENST00000456500 1047 ntBASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 PPP1R2P6-201ENST00000478565 588 ntBASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 AC008413.2-201ENST00000507398 342 ntTSL 3 BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 AC084026.1-201ENST00000522028 564 ntTSL 4 BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 AC010809.1-201ENST00000560268 562 ntTSL 3 BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 MIR3157-201ENST00000578688 85 ntBASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 AC010327.2-201ENST00000587647 488 ntBASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 AC005828.7-201ENST00000607331 556 ntBASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 GLUD1P2-202ENST00000630097 606 ntTSL 3 BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 AL353572.3-201ENST00000636536 670 ntAPPRIS P1 BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 ECT2-201ENST00000232458 4087 ntAPPRIS P2 TSL 1 (best) BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 AK3-201ENST00000359883 1536 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 BRDT-202ENST00000362005 3409 ntAPPRIS P3 TSL 1 (best) BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 NOX1-204ENST00000372966 2529 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 PAX8-AS1-202ENST00000422956 11799 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 SERPINB8-203ENST00000397985 3477 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 WDR89-202ENST00000394942 2993 ntAPPRIS P1 TSL 5 BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 FZD3-204ENST00000537916 13740 ntAPPRIS P1 TSL 2 BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 OPALIN-202ENST00000393870 3578 ntTSL 3 BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 UTY-212ENST00000545955 6817 ntAPPRIS P5 TSL 1 (best) BASIC7.04□□□□□ -1.28
HDDC3Q8N4P3 AC096582.3-201ENST00000636578 3716 ntAPPRIS P1 TSL 5 BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 PSG6-201ENST00000187910 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 SUN3-203ENST00000412142 1448 ntTSL 5 BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 DCX-203ENST00000371993 9231 ntAPPRIS ALT1 TSL 5 BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 CCDC152-201ENST00000361970 3431 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 INTS7-202ENST00000366993 3422 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 PARN-201ENST00000341484 2100 ntTSL 2 BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 CCDC129-203ENST00000409210 3773 ntAPPRIS ALT2 TSL 2 BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 RBM41-202ENST00000372487 2579 ntAPPRIS ALT1 TSL 2 BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 AL117339.5-201ENST00000640275 3955 ntAPPRIS P1 TSL 5 BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 PTK2-207ENST00000517887 4661 ntTSL 5 BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 RNF14-204ENST00000394519 4173 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
HDDC3Q8N4P3 PRKAA1-201ENST00000296800 1134 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms