Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 uc_338.37-201ENST00000620113 186 ntBASIC8.53□□□□□ -1.04
HMGB1P09429 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC8.53□□□□□ -1.04
HMGB1P09429 AL355860.1-201ENST00000636087 1229 ntAPPRIS P1 TSL 2 BASIC8.53□□□□□ -1.04
HMGB1P09429 FGL2-202ENST00000637771 989 ntBASIC8.53□□□□□ -1.04
HMGB1P09429 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC8.53□□□□□ -1.04
HMGB1P09429 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HMGB1P09429 CD163-209ENST00000541972 3590 ntAPPRIS ALT2 TSL 5 BASIC8.53□□□□□ -1.04
HMGB1P09429 AC007114.2-201ENST00000576014 4281 ntBASIC8.53□□□□□ -1.04
HMGB1P09429 STN1-202ENST00000369764 1311 ntAPPRIS P1 TSL 2 BASIC8.53□□□□□ -1.04
HMGB1P09429 CHST12-201ENST00000258711 15979 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
HMGB1P09429 TTTY2-201ENST00000417072 3168 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HMGB1P09429 TTTY2B-201ENST00000450591 3168 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HMGB1P09429 PTPRR-202ENST00000342084 2037 ntAPPRIS ALT2 TSL 2 BASIC8.53□□□□□ -1.04
HMGB1P09429 LRTOMT-210ENST00000447974 2007 ntTSL 2 BASIC8.53□□□□□ -1.04
HMGB1P09429 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC8.52□□□□□ -1.04
HMGB1P09429 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC8.52□□□□□ -1.05
HMGB1P09429 ANKRD17-203ENST00000509867 8105 ntAPPRIS ALT2 TSL 1 (best) BASIC8.52□□□□□ -1.05
HMGB1P09429 CLEC3A-201ENST00000299642 1971 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
HMGB1P09429 ATP1B4-203ENST00000539306 4644 ntTSL 2 BASIC8.52□□□□□ -1.05
HMGB1P09429 IARS-206ENST00000447699 4186 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
HMGB1P09429 UBE2D3-204ENST00000349311 838 ntAPPRIS ALT1 TSL 2 BASIC8.52□□□□□ -1.05
HMGB1P09429 S100A5-202ENST00000368718 710 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
HMGB1P09429 BRD8-204ENST00000411594 2967 ntTSL 5 BASIC8.52□□□□□ -1.05
HMGB1P09429 AL121916.1-201ENST00000429405 308 ntBASIC8.52□□□□□ -1.05
HMGB1P09429 LINC01747-201ENST00000437696 1067 ntTSL 2 BASIC8.52□□□□□ -1.05
HMGB1P09429 AC009411.2-201ENST00000458359 539 ntTSL 4 BASIC8.52□□□□□ -1.05
HMGB1P09429 NDUFB2-215ENST00000482954 544 ntTSL 3 BASIC8.52□□□□□ -1.05
HMGB1P09429 AC106798.1-202ENST00000506819 589 ntTSL 4 BASIC8.52□□□□□ -1.05
HMGB1P09429 C4orf19-203ENST00000508175 828 ntTSL 3 BASIC8.52□□□□□ -1.05
HMGB1P09429 AC097103.2-205ENST00000515247 567 ntTSL 4 BASIC8.52□□□□□ -1.05
HMGB1P09429 RNA5SP116-201ENST00000516132 98 ntBASIC8.52□□□□□ -1.05
HMGB1P09429 AC027026.1-201ENST00000532323 742 ntBASIC8.52□□□□□ -1.05
HMGB1P09429 MEPE-208ENST00000540395 2135 ntAPPRIS ALT2 TSL 4 BASIC8.52□□□□□ -1.05
HMGB1P09429 COPZ1-205ENST00000548753 778 ntTSL 3 BASIC8.52□□□□□ -1.05
HMGB1P09429 AC011595.1-201ENST00000548901 753 ntTSL 3 BASIC8.52□□□□□ -1.05
HMGB1P09429 COPZ1-218ENST00000553231 551 ntTSL 5 BASIC8.52□□□□□ -1.05
HMGB1P09429 AL049869.4-201ENST00000555669 178 ntBASIC8.52□□□□□ -1.05
HMGB1P09429 NR2F2-AS1-209ENST00000560800 549 ntTSL 4 BASIC8.52□□□□□ -1.05
HMGB1P09429 AC027801.5-201ENST00000574365 416 ntTSL 3 BASIC8.52□□□□□ -1.05
HMGB1P09429 AL365223.1-201ENST00000574864 1297 ntBASIC8.52□□□□□ -1.05
HMGB1P09429 RN7SL311P-201ENST00000579858 306 ntBASIC8.52□□□□□ -1.05
HMGB1P09429 TPGS2-204ENST00000587129 841 ntTSL 4 BASIC8.52□□□□□ -1.05
HMGB1P09429 PRR13P5-201ENST00000596581 442 ntBASIC8.52□□□□□ -1.05
HMGB1P09429 AC125494.2-201ENST00000602431 657 ntBASIC8.52□□□□□ -1.05
HMGB1P09429 NDUFB9P1-201ENST00000604683 510 ntBASIC8.52□□□□□ -1.05
HMGB1P09429 AC020658.4-201ENST00000613987 684 ntBASIC8.52□□□□□ -1.05
HMGB1P09429 AL133370.2-201ENST00000619934 439 ntBASIC8.52□□□□□ -1.05
HMGB1P09429 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC8.52□□□□□ -1.05
HMGB1P09429 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC8.52□□□□□ -1.05
HMGB1P09429 LINC01002-204ENST00000631644 473 ntTSL 5 BASIC8.52□□□□□ -1.05
HMGB1P09429 AL513321.2-202ENST00000634479 921 ntTSL 5 BASIC8.52□□□□□ -1.05
HMGB1P09429 LINC01427-203ENST00000635277 781 ntTSL 5 BASIC8.52□□□□□ -1.05
HMGB1P09429 INPP4B-212ENST00000507861 1506 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
HMGB1P09429 TIAL1-203ENST00000369093 5072 ntTSL 2 BASIC8.52□□□□□ -1.05
HMGB1P09429 MMP10-201ENST00000279441 1758 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
HMGB1P09429 OR1L8-202ENST00000641027 2024 ntAPPRIS P1 BASIC8.52□□□□□ -1.05
HMGB1P09429 ADGRL3-204ENST00000506720 4962 ntAPPRIS ALT2 TSL 5 BASIC8.52□□□□□ -1.05
HMGB1P09429 SCN2A-215ENST00000637266 8610 ntAPPRIS ALT1 TSL 5 BASIC8.52□□□□□ -1.05
HMGB1P09429 ECT2-201ENST00000232458 4087 ntAPPRIS P2 TSL 1 (best) BASIC8.52□□□□□ -1.05
HMGB1P09429 MAPK10-207ENST00000395166 3085 ntAPPRIS P2 TSL 2 BASIC8.52□□□□□ -1.05
HMGB1P09429 LINC00907-205ENST00000589068 1812 ntTSL 2 BASIC8.52□□□□□ -1.05
HMGB1P09429 CEBPZ-201ENST00000234170 3463 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
HMGB1P09429 GPRIN3-201ENST00000333209 6260 ntAPPRIS P1 BASIC8.52□□□□□ -1.05
HMGB1P09429 ORC3-206ENST00000546266 2470 ntTSL 2 BASIC8.52□□□□□ -1.05
HMGB1P09429 MED6-212ENST00000615788 1700 ntTSL 5 BASIC8.51□□□□□ -1.05
HMGB1P09429 GABRA1-211ENST00000635880 1739 ntAPPRIS P1 TSL 5 BASIC8.51□□□□□ -1.05
HMGB1P09429 CEP85-201ENST00000252992 3935 ntAPPRIS P3 TSL 1 (best) BASIC8.51□□□□□ -1.05
HMGB1P09429 SYTL5-202ENST00000456733 4704 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
HMGB1P09429 TTC21A-203ENST00000431162 4209 ntAPPRIS ALT2 TSL 1 (best) BASIC8.51□□□□□ -1.05
HMGB1P09429 SAMD3-203ENST00000437477 2028 ntAPPRIS P1 TSL 5 BASIC8.51□□□□□ -1.05
HMGB1P09429 SORBS1-207ENST00000371239 2436 ntAPPRIS ALT2 TSL 5 BASIC8.51□□□□□ -1.05
HMGB1P09429 NSUN4-208ENST00000498008 3867 ntTSL 2 BASIC8.51□□□□□ -1.05
HMGB1P09429 AC004988.1-201ENST00000415237 1771 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
HMGB1P09429 CCAT2-201ENST00000630920 1752 ntBASIC8.51□□□□□ -1.05
HMGB1P09429 PTK2-207ENST00000517887 4661 ntTSL 5 BASIC8.51□□□□□ -1.05
HMGB1P09429 INTS6-203ENST00000442263 15428 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
HMGB1P09429 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC8.51□□□□□ -1.05
HMGB1P09429 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
HMGB1P09429 BANF2-201ENST00000246090 595 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
HMGB1P09429 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC8.51□□□□□ -1.05
HMGB1P09429 ALDH1A1-202ENST00000376939 822 ntTSL 5 BASIC8.51□□□□□ -1.05
HMGB1P09429 MIR1204-201ENST00000408388 67 ntBASIC8.51□□□□□ -1.05
HMGB1P09429 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC8.51□□□□□ -1.05
HMGB1P09429 AL031005.1-201ENST00000416959 723 ntTSL 3 BASIC8.51□□□□□ -1.05
HMGB1P09429 ANKRD7-202ENST00000417525 1242 ntAPPRIS ALT2 TSL 5 BASIC8.51□□□□□ -1.05
HMGB1P09429 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC8.51□□□□□ -1.05
HMGB1P09429 DPPA2P2-201ENST00000418220 897 ntBASIC8.51□□□□□ -1.05
HMGB1P09429 AC118470.1-201ENST00000419891 453 ntAPPRIS P1 TSL 3 BASIC8.51□□□□□ -1.05
HMGB1P09429 AC013470.3-201ENST00000420252 1194 ntBASIC8.51□□□□□ -1.05
HMGB1P09429 AL022100.2-201ENST00000422548 389 ntTSL 3 BASIC8.51□□□□□ -1.05
HMGB1P09429 HNRNPA1P30-201ENST00000424329 751 ntTSL 3 BASIC8.51□□□□□ -1.05
HMGB1P09429 MBNL1-213ENST00000465907 945 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
HMGB1P09429 AP005202.1-201ENST00000489915 867 ntBASIC8.51□□□□□ -1.05
HMGB1P09429 AC112206.2-201ENST00000503106 557 ntTSL 4 BASIC8.51□□□□□ -1.05
HMGB1P09429 AC096741.2-201ENST00000510225 637 ntTSL 5 BASIC8.51□□□□□ -1.05
HMGB1P09429 AC138866.1-201ENST00000514522 497 ntBASIC8.51□□□□□ -1.05
HMGB1P09429 IGHVIII-26-1-201ENST00000520387 250 ntBASIC8.51□□□□□ -1.05
HMGB1P09429 MIR5705-201ENST00000579870 89 ntBASIC8.51□□□□□ -1.05
HMGB1P09429 AL133406.3-201ENST00000606817 541 ntBASIC8.51□□□□□ -1.05
HMGB1P09429 AC027271.1-201ENST00000610270 610 ntBASIC8.51□□□□□ -1.05
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms