Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AC093909.6-201ENST00000624757 775 ntBASIC7.11□□□□□ -1.27
PCDH9Q9HC56 LUZP1-203ENST00000418342 8421 ntAPPRIS P1 TSL 5 BASIC7.11□□□□□ -1.27
PCDH9Q9HC56 PCDH18-203ENST00000507846 4625 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
PCDH9Q9HC56 TC2N-202ENST00000360594 3751 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
PCDH9Q9HC56 RBPJ-214ENST00000507561 1689 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
PCDH9Q9HC56 ADTRP-203ENST00000414691 2058 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
PCDH9Q9HC56 RAB9B-201ENST00000243298 3748 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
PCDH9Q9HC56 CASP10-208ENST00000448480 1603 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
PCDH9Q9HC56 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC7.11□□□□□ -1.27
PCDH9Q9HC56 AC011592.1-201ENST00000624647 3634 ntBASIC7.11□□□□□ -1.27
PCDH9Q9HC56 SLMAP-202ENST00000295952 4420 ntAPPRIS P1 TSL 2 BASIC7.11□□□□□ -1.27
PCDH9Q9HC56 SYTL4-203ENST00000372981 4847 ntTSL 2 BASIC7.11□□□□□ -1.27
PCDH9Q9HC56 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC7.11□□□□□ -1.27
PCDH9Q9HC56 CCR2-204ENST00000445132 2386 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
PCDH9Q9HC56 ZBTB25-204ENST00000608382 10372 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
PCDH9Q9HC56 THSD7B-202ENST00000409968 6111 ntAPPRIS P2 TSL 5 BASIC7.11□□□□□ -1.27
PCDH9Q9HC56 SRSF11-202ENST00000370950 3784 ntAPPRIS P3 TSL 1 (best) BASIC7.11□□□□□ -1.27
PCDH9Q9HC56 LINC01776-201ENST00000418344 2229 ntTSL 2 BASIC7.11□□□□□ -1.27
PCDH9Q9HC56 CREM-216ENST00000429130 1476 ntTSL 5 BASIC7.11□□□□□ -1.27
PCDH9Q9HC56 AC062029.1-202ENST00000606164 3651 ntBASIC7.11□□□□□ -1.27
PCDH9Q9HC56 JADE3-203ENST00000611250 4713 ntAPPRIS P1 TSL 2 BASIC7.1□□□□□ -1.27
PCDH9Q9HC56 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC7.1□□□□□ -1.27
PCDH9Q9HC56 AC093278.2-201ENST00000564956 2485 ntBASIC7.1□□□□□ -1.27
PCDH9Q9HC56 SLC14A1-208ENST00000586142 2846 ntAPPRIS P3 TSL 1 (best) BASIC7.1□□□□□ -1.27
PCDH9Q9HC56 AL359263.1-201ENST00000441188 2796 ntBASIC7.1□□□□□ -1.27
PCDH9Q9HC56 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC7.1□□□□□ -1.27
PCDH9Q9HC56 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
PCDH9Q9HC56 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
PCDH9Q9HC56 PAICS-208ENST00000514888 3340 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
PCDH9Q9HC56 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
PCDH9Q9HC56 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC7.1□□□□□ -1.27
PCDH9Q9HC56 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC7.1□□□□□ -1.27
PCDH9Q9HC56 RPS7-201ENST00000304921 786 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
PCDH9Q9HC56 MXI1-204ENST00000369612 879 ntTSL 3 BASIC7.1□□□□□ -1.27
PCDH9Q9HC56 NPPA-AS1-201ENST00000400892 936 ntTSL 3 BASIC7.1□□□□□ -1.27
PCDH9Q9HC56 CCR8-202ENST00000414803 1078 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
PCDH9Q9HC56 EIF4A1P2-201ENST00000422633 1220 ntBASIC7.1□□□□□ -1.27
PCDH9Q9HC56 CHCHD3P1-201ENST00000425516 676 ntBASIC7.1□□□□□ -1.27
PCDH9Q9HC56 AL138479.1-201ENST00000426913 484 ntBASIC7.1□□□□□ -1.27
PCDH9Q9HC56 AL591178.2-201ENST00000429191 461 ntTSL 3 BASIC7.1□□□□□ -1.27
PCDH9Q9HC56 AC006333.1-204ENST00000429396 648 ntTSL 3 BASIC7.1□□□□□ -1.27
PCDH9Q9HC56 LINC01839-201ENST00000451348 727 ntTSL 3 BASIC7.1□□□□□ -1.27
PCDH9Q9HC56 AC013727.1-202ENST00000455716 580 ntTSL 4 BASIC7.1□□□□□ -1.27
PCDH9Q9HC56 STARD13-IT1-201ENST00000456087 452 ntTSL 5 BASIC7.1□□□□□ -1.27
PCDH9Q9HC56 AC025271.1-201ENST00000485045 429 ntBASIC7.1□□□□□ -1.27
PCDH9Q9HC56 HMGB3P14-201ENST00000494195 599 ntBASIC7.1□□□□□ -1.27
PCDH9Q9HC56 LINC01950-202ENST00000513273 572 ntTSL 2 BASIC7.1□□□□□ -1.27
PCDH9Q9HC56 AC137549.1-201ENST00000514243 533 ntBASIC7.1□□□□□ -1.27
PCDH9Q9HC56 IGLVV-66-201ENST00000523818 341 ntBASIC7.1□□□□□ -1.27
PCDH9Q9HC56 AC107952.1-201ENST00000524200 376 ntBASIC7.1□□□□□ -1.27
PCDH9Q9HC56 AC022509.1-203ENST00000541940 708 ntTSL 4 BASIC7.1□□□□□ -1.27
PCDH9Q9HC56 MED31-202ENST00000574128 619 ntTSL 3 BASIC7.1□□□□□ -1.27
PCDH9Q9HC56 AL353807.4-201ENST00000604995 257 ntBASIC7.1□□□□□ -1.27
PCDH9Q9HC56 CCL23-203ENST00000615050 624 ntAPPRIS P3 TSL 1 (best) BASIC7.1□□□□□ -1.27
PCDH9Q9HC56 ALKAL2-208ENST00000619265 496 ntTSL 2 BASIC7.1□□□□□ -1.27
PCDH9Q9HC56 EDRF1-AS1-214ENST00000622798 526 ntTSL 5 BASIC7.1□□□□□ -1.27
PCDH9Q9HC56 L3MBTL3-201ENST00000361794 4217 ntAPPRIS P4 TSL 5 BASIC7.1□□□□□ -1.27
PCDH9Q9HC56 PLXNA4-201ENST00000321063 13061 ntAPPRIS P1 TSL 5 BASIC7.1□□□□□ -1.27
PCDH9Q9HC56 MEPE-203ENST00000424957 2022 ntAPPRIS P3 TSL 2 BASIC7.1□□□□□ -1.27
PCDH9Q9HC56 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
PCDH9Q9HC56 CAST-202ENST00000325674 3356 ntTSL 5 BASIC7.09□□□□□ -1.27
PCDH9Q9HC56 AC007998.4-201ENST00000612496 2533 ntBASIC7.09□□□□□ -1.27
PCDH9Q9HC56 LINC01360-203ENST00000440762 3871 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
PCDH9Q9HC56 PSD3-218ENST00000523619 8145 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.27
PCDH9Q9HC56 SLC26A7-202ENST00000309536 2656 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
PCDH9Q9HC56 PAPOLG-201ENST00000238714 4263 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
PCDH9Q9HC56 LINC01011-204ENST00000605901 1573 ntTSL 2 BASIC7.09□□□□□ -1.27
PCDH9Q9HC56 RASGRF1-201ENST00000394745 2850 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
PCDH9Q9HC56 OR2L13-203ENST00000641893 1817 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
PCDH9Q9HC56 AL359382.1-201ENST00000417838 426 ntTSL 5 BASIC7.09□□□□□ -1.27
PCDH9Q9HC56 AC106870.2-201ENST00000421411 691 ntTSL 3 BASIC7.09□□□□□ -1.27
PCDH9Q9HC56 AC009362.1-201ENST00000427253 406 ntBASIC7.09□□□□□ -1.27
PCDH9Q9HC56 LINC01795-201ENST00000454367 813 ntTSL 3 BASIC7.09□□□□□ -1.27
PCDH9Q9HC56 SRP68P2-201ENST00000456184 254 ntBASIC7.09□□□□□ -1.27
PCDH9Q9HC56 AC010878.1-201ENST00000456500 1047 ntBASIC7.09□□□□□ -1.27
PCDH9Q9HC56 MED28P7-201ENST00000456611 530 ntBASIC7.09□□□□□ -1.27
PCDH9Q9HC56 LINC02083-201ENST00000462835 515 ntTSL 3 BASIC7.09□□□□□ -1.27
PCDH9Q9HC56 ZNF286A-205ENST00000472486 827 ntTSL 2 BASIC7.09□□□□□ -1.27
PCDH9Q9HC56 AF305872.1-201ENST00000485217 471 ntBASIC7.09□□□□□ -1.27
PCDH9Q9HC56 AC117395.1-201ENST00000487390 403 ntBASIC7.09□□□□□ -1.27
PCDH9Q9HC56 OSTC-204ENST00000512478 663 ntTSL 5 BASIC7.09□□□□□ -1.27
PCDH9Q9HC56 AC025766.1-201ENST00000514061 409 ntTSL 5 BASIC7.09□□□□□ -1.27
PCDH9Q9HC56 OR4A13P-201ENST00000529316 942 ntBASIC7.09□□□□□ -1.27
PCDH9Q9HC56 NXPE2P1-201ENST00000543705 726 ntBASIC7.09□□□□□ -1.27
PCDH9Q9HC56 LINC01919-201ENST00000578610 568 ntTSL 5 BASIC7.09□□□□□ -1.27
PCDH9Q9HC56 AC110603.1-201ENST00000580645 468 ntTSL 3 BASIC7.09□□□□□ -1.27
PCDH9Q9HC56 AC011498.1-203ENST00000589066 359 ntTSL 3 BASIC7.09□□□□□ -1.27
PCDH9Q9HC56 AC008752.2-201ENST00000591174 750 ntTSL 3 BASIC7.09□□□□□ -1.27
PCDH9Q9HC56 MAGEB5-201ENST00000602297 1216 ntAPPRIS P1 TSL 3 BASIC7.09□□□□□ -1.27
PCDH9Q9HC56 AC024085.1-201ENST00000604299 432 ntBASIC7.09□□□□□ -1.27
PCDH9Q9HC56 OR51M1-203ENST00000642046 4092 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
PCDH9Q9HC56 LINC01991-202ENST00000446091 1524 ntTSL 2 BASIC7.09□□□□□ -1.27
PCDH9Q9HC56 LINC00922-203ENST00000569736 1760 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
PCDH9Q9HC56 BDNF-212ENST00000525528 4766 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
PCDH9Q9HC56 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
PCDH9Q9HC56 ABL2-201ENST00000344730 6910 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.27
PCDH9Q9HC56 GKN2-202ENST00000481498 1498 ntTSL 2 BASIC7.09□□□□□ -1.27
PCDH9Q9HC56 AL359195.2-201ENST00000623657 4412 ntBASIC7.09□□□□□ -1.27
PCDH9Q9HC56 HSP90AA2P-201ENST00000530115 2196 ntBASIC7.09□□□□□ -1.27
PCDH9Q9HC56 PMCHL2-202ENST00000450213 1917 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 66.1 ms