Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 TIMM21-201ENST00000169551 3095 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
NKX3-1Q99801 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC6.05□□□□□ -1.44
NKX3-1Q99801 WDR93-204ENST00000558000 1886 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
NKX3-1Q99801 AC105114.1-201ENST00000624795 1862 ntBASIC6.05□□□□□ -1.44
NKX3-1Q99801 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
NKX3-1Q99801 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC6.04□□□□□ -1.44
NKX3-1Q99801 SLC26A7-202ENST00000309536 2656 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
NKX3-1Q99801 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
NKX3-1Q99801 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
NKX3-1Q99801 LINC01537-201ENST00000450804 2450 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
NKX3-1Q99801 AL357568.1-201ENST00000421530 1963 ntTSL 2 BASIC6.04□□□□□ -1.44
NKX3-1Q99801 SORBS1-209ENST00000371245 2779 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
NKX3-1Q99801 SGK3-201ENST00000345714 4055 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
NKX3-1Q99801 ZNF761-202ENST00000432094 4061 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
NKX3-1Q99801 FAM221B-203ENST00000423537 2931 ntAPPRIS P2 TSL 1 (best) BASIC6.04□□□□□ -1.44
NKX3-1Q99801 UGT2B27P-201ENST00000505092 1620 ntBASIC6.04□□□□□ -1.44
NKX3-1Q99801 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
NKX3-1Q99801 DACH2-207ENST00000510272 1764 ntTSL 2 BASIC6.04□□□□□ -1.44
NKX3-1Q99801 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
NKX3-1Q99801 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
NKX3-1Q99801 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
NKX3-1Q99801 PABPC1P8-201ENST00000452851 2086 ntBASIC6.04□□□□□ -1.44
NKX3-1Q99801 SCGB1A1-201ENST00000278282 441 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
NKX3-1Q99801 KRTAP19-6-201ENST00000334046 330 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
NKX3-1Q99801 CTSL3P-201ENST00000354530 657 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
NKX3-1Q99801 TCEAL8-201ENST00000360000 1131 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
NKX3-1Q99801 TSACC-201ENST00000368251 438 ntAPPRIS P1 TSL 3 BASIC6.04□□□□□ -1.44
NKX3-1Q99801 TCEAL8-202ENST00000372685 1222 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
NKX3-1Q99801 ALDH1A1-202ENST00000376939 822 ntTSL 5 BASIC6.04□□□□□ -1.44
NKX3-1Q99801 FAM107B-203ENST00000378462 692 ntAPPRIS P1 TSL 3 BASIC6.04□□□□□ -1.44
NKX3-1Q99801 RPL7-203ENST00000396466 762 ntTSL 3 BASIC6.04□□□□□ -1.44
NKX3-1Q99801 RN7SKP254-201ENST00000410685 310 ntBASIC6.04□□□□□ -1.44
NKX3-1Q99801 LINC02257-201ENST00000412445 605 ntTSL 2 BASIC6.04□□□□□ -1.44
NKX3-1Q99801 AL161725.1-203ENST00000415004 1081 ntTSL 5 BASIC6.04□□□□□ -1.44
NKX3-1Q99801 HCG25-217ENST00000422366 702 ntTSL 3 BASIC6.04□□□□□ -1.44
NKX3-1Q99801 AL162231.2-201ENST00000434627 665 ntTSL 2 BASIC6.04□□□□□ -1.44
NKX3-1Q99801 PGM5P3-AS1-202ENST00000442069 615 ntTSL 2 BASIC6.04□□□□□ -1.44
NKX3-1Q99801 SDHCP3-201ENST00000445371 506 ntBASIC6.04□□□□□ -1.44
NKX3-1Q99801 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC6.04□□□□□ -1.44
NKX3-1Q99801 AL359839.1-201ENST00000451975 1160 ntBASIC6.04□□□□□ -1.44
NKX3-1Q99801 LINC01006-207ENST00000458645 738 ntTSL 4 BASIC6.04□□□□□ -1.44
NKX3-1Q99801 SNORA81.1-201ENST00000458922 177 ntBASIC6.04□□□□□ -1.44
NKX3-1Q99801 AC093627.1-201ENST00000465755 877 ntTSL 3 BASIC6.04□□□□□ -1.44
NKX3-1Q99801 RN7SL145P-201ENST00000469955 296 ntBASIC6.04□□□□□ -1.44
NKX3-1Q99801 AP000805.1-201ENST00000471604 784 ntBASIC6.04□□□□□ -1.44
NKX3-1Q99801 AC026254.2-201ENST00000475295 371 ntBASIC6.04□□□□□ -1.44
NKX3-1Q99801 AC097494.1-201ENST00000512898 732 ntTSL 3 BASIC6.04□□□□□ -1.44
NKX3-1Q99801 RN7SKP98-201ENST00000517070 156 ntBASIC6.04□□□□□ -1.44
NKX3-1Q99801 COX6C-209ENST00000523016 745 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
NKX3-1Q99801 AC013546.1-201ENST00000523232 564 ntTSL 4 BASIC6.04□□□□□ -1.44
NKX3-1Q99801 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC6.04□□□□□ -1.44
NKX3-1Q99801 AC011611.6-201ENST00000547483 255 ntBASIC6.04□□□□□ -1.44
NKX3-1Q99801 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC6.04□□□□□ -1.44
NKX3-1Q99801 AC091304.5-201ENST00000568969 158 ntBASIC6.04□□□□□ -1.44
NKX3-1Q99801 GTF2IP6-201ENST00000583143 541 ntBASIC6.04□□□□□ -1.44
NKX3-1Q99801 PRELID3BP3-201ENST00000584963 545 ntBASIC6.04□□□□□ -1.44
NKX3-1Q99801 AC087575.1-201ENST00000585087 229 ntBASIC6.04□□□□□ -1.44
NKX3-1Q99801 AL596325.2-201ENST00000609669 505 ntTSL 3 BASIC6.04□□□□□ -1.44
NKX3-1Q99801 PART1_3.1-201ENST00000619680 131 ntBASIC6.04□□□□□ -1.44
NKX3-1Q99801 AC078909.2-201ENST00000620584 398 ntBASIC6.04□□□□□ -1.44
NKX3-1Q99801 AC010809.3-201ENST00000621310 641 ntBASIC6.04□□□□□ -1.44
NKX3-1Q99801 AC211433.3-201ENST00000623770 375 ntBASIC6.04□□□□□ -1.44
NKX3-1Q99801 AC011471.4-201ENST00000638271 216 ntBASIC6.04□□□□□ -1.44
NKX3-1Q99801 AC017000.1-201ENST00000639380 578 ntTSL 5 BASIC6.04□□□□□ -1.44
NKX3-1Q99801 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
NKX3-1Q99801 IAPP-205ENST00000542023 2015 ntTSL 2 BASIC6.04□□□□□ -1.44
NKX3-1Q99801 PCBP1-AS1-210ENST00000416395 2451 ntTSL 2 BASIC6.04□□□□□ -1.44
NKX3-1Q99801 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
NKX3-1Q99801 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
NKX3-1Q99801 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC6.04□□□□□ -1.44
NKX3-1Q99801 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
NKX3-1Q99801 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC6.03□□□□□ -1.44
NKX3-1Q99801 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC6.03□□□□□ -1.44
NKX3-1Q99801 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
NKX3-1Q99801 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
NKX3-1Q99801 CENPJ-206ENST00000616936 5020 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
NKX3-1Q99801 SNTN-203ENST00000496807 3746 ntTSL 4 BASIC6.03□□□□□ -1.44
NKX3-1Q99801 OR2G6-201ENST00000343414 1049 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
NKX3-1Q99801 FAM204BP-201ENST00000369171 701 ntBASIC6.03□□□□□ -1.44
NKX3-1Q99801 HOPX-204ENST00000381260 1141 ntTSL 3 BASIC6.03□□□□□ -1.44
NKX3-1Q99801 AC008758.2-201ENST00000420038 695 ntTSL 2 BASIC6.03□□□□□ -1.44
NKX3-1Q99801 FABP5P1-201ENST00000423401 411 ntBASIC6.03□□□□□ -1.44
NKX3-1Q99801 LINC00390-201ENST00000432331 340 ntTSL 5 BASIC6.03□□□□□ -1.44
NKX3-1Q99801 OR6C71P-201ENST00000432580 913 ntBASIC6.03□□□□□ -1.44
NKX3-1Q99801 FABP5P2-201ENST00000439042 408 ntBASIC6.03□□□□□ -1.44
NKX3-1Q99801 LINC01525-201ENST00000442182 511 ntTSL 2 BASIC6.03□□□□□ -1.44
NKX3-1Q99801 AC097263.1-201ENST00000496795 606 ntBASIC6.03□□□□□ -1.44
NKX3-1Q99801 AC110772.1-201ENST00000503037 474 ntTSL 3 BASIC6.03□□□□□ -1.44
NKX3-1Q99801 IGLV1-62-201ENST00000518003 441 ntBASIC6.03□□□□□ -1.44
NKX3-1Q99801 AP003438.1-201ENST00000518704 435 ntTSL 3 BASIC6.03□□□□□ -1.44
NKX3-1Q99801 AP001994.1-201ENST00000527539 826 ntBASIC6.03□□□□□ -1.44
NKX3-1Q99801 RNASE11-206ENST00000553849 1101 ntAPPRIS P2 TSL 1 (best) BASIC6.03□□□□□ -1.44
NKX3-1Q99801 C14orf2-209ENST00000554880 707 ntAPPRIS P1 TSL 3 BASIC6.03□□□□□ -1.44
NKX3-1Q99801 COX6CP11-201ENST00000555293 229 ntBASIC6.03□□□□□ -1.44
NKX3-1Q99801 THSD4-AS1-204ENST00000566268 468 ntTSL 4 BASIC6.03□□□□□ -1.44
NKX3-1Q99801 AC090774.2-201ENST00000584708 322 ntBASIC6.03□□□□□ -1.44
NKX3-1Q99801 AL050343.1-203ENST00000586761 1290 ntTSL 3 BASIC6.03□□□□□ -1.44
NKX3-1Q99801 AL035417.2-201ENST00000603887 796 ntBASIC6.03□□□□□ -1.44
NKX3-1Q99801 ELMO2P1-201ENST00000611569 473 ntTSL 5 BASIC6.03□□□□□ -1.44
NKX3-1Q99801 AC079414.3-201ENST00000612986 1090 ntBASIC6.03□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms