Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 FZD10-202ENST00000539839 3282 ntBASIC18.17■□□□□ 0.5
DDX28Q9NUL7 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
DDX28Q9NUL7 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.17■□□□□ 0.5
DDX28Q9NUL7 AP000974.1-201ENST00000623909 2387 ntBASIC18.17■□□□□ 0.5
DDX28Q9NUL7 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
DDX28Q9NUL7 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
DDX28Q9NUL7 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
DDX28Q9NUL7 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
DDX28Q9NUL7 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
DDX28Q9NUL7 TNXA-203ENST00000507684 2038 ntBASIC18.16■□□□□ 0.5
DDX28Q9NUL7 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 SP2-202ENST00000613139 908 ntTSL 5 BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 AC073314.1-201ENST00000568729 2216 ntBASIC18.16■□□□□ 0.5
DDX28Q9NUL7 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
DDX28Q9NUL7 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
DDX28Q9NUL7 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
DDX28Q9NUL7 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
DDX28Q9NUL7 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.15■□□□□ 0.5
DDX28Q9NUL7 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC18.15■□□□□ 0.5
DDX28Q9NUL7 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
DDX28Q9NUL7 AC005082.1-201ENST00000413042 2259 ntBASIC18.15■□□□□ 0.5
DDX28Q9NUL7 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.15■□□□□ 0.5
DDX28Q9NUL7 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
DDX28Q9NUL7 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
DDX28Q9NUL7 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
DDX28Q9NUL7 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
DDX28Q9NUL7 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
DDX28Q9NUL7 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC18.15■□□□□ 0.5
DDX28Q9NUL7 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
DDX28Q9NUL7 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC18.15■□□□□ 0.5
DDX28Q9NUL7 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC18.15■□□□□ 0.5
DDX28Q9NUL7 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
DDX28Q9NUL7 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
DDX28Q9NUL7 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
DDX28Q9NUL7 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18.15■□□□□ 0.5
DDX28Q9NUL7 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
DDX28Q9NUL7 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
DDX28Q9NUL7 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
DDX28Q9NUL7 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
DDX28Q9NUL7 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
DDX28Q9NUL7 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.14■□□□□ 0.5
DDX28Q9NUL7 LTB4R2-202ENST00000528054 3092 ntBASIC18.14■□□□□ 0.5
DDX28Q9NUL7 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
DDX28Q9NUL7 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.14■□□□□ 0.5
DDX28Q9NUL7 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
DDX28Q9NUL7 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
DDX28Q9NUL7 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
DDX28Q9NUL7 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
DDX28Q9NUL7 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
DDX28Q9NUL7 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
DDX28Q9NUL7 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
DDX28Q9NUL7 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
DDX28Q9NUL7 AC034268.1-201ENST00000441047 882 ntBASIC18.14■□□□□ 0.49
DDX28Q9NUL7 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC18.14■□□□□ 0.49
DDX28Q9NUL7 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
DDX28Q9NUL7 DUX4L2-201ENST00000561772 1275 ntBASIC18.14■□□□□ 0.49
DDX28Q9NUL7 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC18.14■□□□□ 0.49
DDX28Q9NUL7 RAB43-208ENST00000615093 783 ntTSL 5 BASIC18.14■□□□□ 0.49
DDX28Q9NUL7 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC18.14■□□□□ 0.49
DDX28Q9NUL7 DUX4L6-201ENST00000626483 1275 ntBASIC18.14■□□□□ 0.49
DDX28Q9NUL7 DUX4L1-201ENST00000627662 1275 ntBASIC18.14■□□□□ 0.49
DDX28Q9NUL7 DUX4L8-201ENST00000629013 1275 ntBASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms