Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PCIF1Q9H4Z3 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PCIF1Q9H4Z3 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC21.83■■□□□ 1.09
PCIF1Q9H4Z3 AL390719.1-204ENST00000412397 1219 ntBASIC21.83■■□□□ 1.09
PCIF1Q9H4Z3 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC21.83■■□□□ 1.09
PCIF1Q9H4Z3 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
PCIF1Q9H4Z3 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC21.83■■□□□ 1.09
PCIF1Q9H4Z3 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC21.83■■□□□ 1.09
PCIF1Q9H4Z3 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC21.83■■□□□ 1.09
PCIF1Q9H4Z3 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.83■■□□□ 1.09
PCIF1Q9H4Z3 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
PCIF1Q9H4Z3 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
PCIF1Q9H4Z3 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
PCIF1Q9H4Z3 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
PCIF1Q9H4Z3 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCIF1Q9H4Z3 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PCIF1Q9H4Z3 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCIF1Q9H4Z3 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
PCIF1Q9H4Z3 ME2-218ENST00000640965 2476 ntTSL 5 BASIC21.82■■□□□ 1.08
PCIF1Q9H4Z3 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PCIF1Q9H4Z3 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC21.82■■□□□ 1.08
PCIF1Q9H4Z3 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
PCIF1Q9H4Z3 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PCIF1Q9H4Z3 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCIF1Q9H4Z3 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCIF1Q9H4Z3 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC21.82■■□□□ 1.08
PCIF1Q9H4Z3 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
PCIF1Q9H4Z3 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC21.82■■□□□ 1.08
PCIF1Q9H4Z3 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC21.82■■□□□ 1.08
PCIF1Q9H4Z3 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC21.82■■□□□ 1.08
PCIF1Q9H4Z3 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCIF1Q9H4Z3 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PCIF1Q9H4Z3 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC21.82■■□□□ 1.08
PCIF1Q9H4Z3 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCIF1Q9H4Z3 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
PCIF1Q9H4Z3 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC21.82■■□□□ 1.08
PCIF1Q9H4Z3 TCF3P1-201ENST00000423021 1937 ntBASIC21.82■■□□□ 1.08
PCIF1Q9H4Z3 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.82■■□□□ 1.08
PCIF1Q9H4Z3 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCIF1Q9H4Z3 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PCIF1Q9H4Z3 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC21.81■■□□□ 1.08
PCIF1Q9H4Z3 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC21.81■■□□□ 1.08
PCIF1Q9H4Z3 HES2-206ENST00000489730 730 ntTSL 2 BASIC21.81■■□□□ 1.08
PCIF1Q9H4Z3 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC21.81■■□□□ 1.08
PCIF1Q9H4Z3 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC21.81■■□□□ 1.08
PCIF1Q9H4Z3 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PCIF1Q9H4Z3 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC21.81■■□□□ 1.08
PCIF1Q9H4Z3 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PCIF1Q9H4Z3 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC21.81■■□□□ 1.08
PCIF1Q9H4Z3 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PCIF1Q9H4Z3 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC21.8■■□□□ 1.08
PCIF1Q9H4Z3 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC21.8■■□□□ 1.08
PCIF1Q9H4Z3 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PCIF1Q9H4Z3 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PCIF1Q9H4Z3 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PCIF1Q9H4Z3 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.8■■□□□ 1.08
PCIF1Q9H4Z3 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PCIF1Q9H4Z3 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PCIF1Q9H4Z3 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PCIF1Q9H4Z3 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.8■■□□□ 1.08
PCIF1Q9H4Z3 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PCIF1Q9H4Z3 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PCIF1Q9H4Z3 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC21.8■■□□□ 1.08
PCIF1Q9H4Z3 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PCIF1Q9H4Z3 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PCIF1Q9H4Z3 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC21.8■■□□□ 1.08
PCIF1Q9H4Z3 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PCIF1Q9H4Z3 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PCIF1Q9H4Z3 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PCIF1Q9H4Z3 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC21.8■■□□□ 1.08
PCIF1Q9H4Z3 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PCIF1Q9H4Z3 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC21.8■■□□□ 1.08
PCIF1Q9H4Z3 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC21.8■■□□□ 1.08
PCIF1Q9H4Z3 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC21.8■■□□□ 1.08
PCIF1Q9H4Z3 OR2A1-AS1-207ENST00000486094 819 ntBASIC21.8■■□□□ 1.08
PCIF1Q9H4Z3 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PCIF1Q9H4Z3 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC21.8■■□□□ 1.08
PCIF1Q9H4Z3 SOX15-203ENST00000570788 1093 ntBASIC21.8■■□□□ 1.08
PCIF1Q9H4Z3 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PCIF1Q9H4Z3 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC21.8■■□□□ 1.08
PCIF1Q9H4Z3 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PCIF1Q9H4Z3 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCIF1Q9H4Z3 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCIF1Q9H4Z3 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCIF1Q9H4Z3 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC21.79■■□□□ 1.08
PCIF1Q9H4Z3 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PCIF1Q9H4Z3 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PCIF1Q9H4Z3 RER1-204ENST00000378518 522 ntTSL 3 BASIC21.79■■□□□ 1.08
PCIF1Q9H4Z3 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC21.79■■□□□ 1.08
PCIF1Q9H4Z3 TBCB-214ENST00000629269 413 ntTSL 5 BASIC21.79■■□□□ 1.08
PCIF1Q9H4Z3 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
PCIF1Q9H4Z3 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCIF1Q9H4Z3 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC21.79■■□□□ 1.08
PCIF1Q9H4Z3 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC21.79■■□□□ 1.08
PCIF1Q9H4Z3 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCIF1Q9H4Z3 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCIF1Q9H4Z3 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCIF1Q9H4Z3 KRT16P6-202ENST00000425692 1426 ntBASIC21.79■■□□□ 1.08
PCIF1Q9H4Z3 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC21.79■■□□□ 1.08
PCIF1Q9H4Z3 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms