Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
UPF3AQ9H1J1 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
UPF3AQ9H1J1 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC22.26■■□□□ 1.15
UPF3AQ9H1J1 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
UPF3AQ9H1J1 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
UPF3AQ9H1J1 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
UPF3AQ9H1J1 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC22.26■■□□□ 1.15
UPF3AQ9H1J1 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
UPF3AQ9H1J1 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
UPF3AQ9H1J1 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC22.25■■□□□ 1.15
UPF3AQ9H1J1 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC22.25■■□□□ 1.15
UPF3AQ9H1J1 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
UPF3AQ9H1J1 AL024507.2-201ENST00000606070 2574 ntBASIC22.25■■□□□ 1.15
UPF3AQ9H1J1 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC22.25■■□□□ 1.15
UPF3AQ9H1J1 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
UPF3AQ9H1J1 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
UPF3AQ9H1J1 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
UPF3AQ9H1J1 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC22.25■■□□□ 1.15
UPF3AQ9H1J1 AL137013.1-201ENST00000432946 1228 ntBASIC22.25■■□□□ 1.15
UPF3AQ9H1J1 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC22.25■■□□□ 1.15
UPF3AQ9H1J1 TMA16-209ENST00000513272 803 ntTSL 2 BASIC22.25■■□□□ 1.15
UPF3AQ9H1J1 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
UPF3AQ9H1J1 AC026271.3-201ENST00000571884 352 ntBASIC22.25■■□□□ 1.15
UPF3AQ9H1J1 RMI2-205ENST00000576027 818 ntTSL 2 BASIC22.25■■□□□ 1.15
UPF3AQ9H1J1 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
UPF3AQ9H1J1 AL031985.4-201ENST00000642138 673 ntBASIC22.25■■□□□ 1.15
UPF3AQ9H1J1 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
UPF3AQ9H1J1 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
UPF3AQ9H1J1 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
UPF3AQ9H1J1 PKD1P6-201ENST00000343738 4769 ntBASIC22.25■■□□□ 1.15
UPF3AQ9H1J1 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
UPF3AQ9H1J1 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC22.25■■□□□ 1.15
UPF3AQ9H1J1 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
UPF3AQ9H1J1 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
UPF3AQ9H1J1 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC22.24■■□□□ 1.15
UPF3AQ9H1J1 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
UPF3AQ9H1J1 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
UPF3AQ9H1J1 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC22.24■■□□□ 1.15
UPF3AQ9H1J1 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
UPF3AQ9H1J1 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC22.24■■□□□ 1.15
UPF3AQ9H1J1 PPP1R14BP5-201ENST00000440334 435 ntBASIC22.24■■□□□ 1.15
UPF3AQ9H1J1 AL445675.2-201ENST00000620291 557 ntBASIC22.24■■□□□ 1.15
UPF3AQ9H1J1 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
UPF3AQ9H1J1 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
UPF3AQ9H1J1 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC22.24■■□□□ 1.15
UPF3AQ9H1J1 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC22.23■■□□□ 1.15
UPF3AQ9H1J1 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC22.23■■□□□ 1.15
UPF3AQ9H1J1 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
UPF3AQ9H1J1 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC22.23■■□□□ 1.15
UPF3AQ9H1J1 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC22.23■■□□□ 1.15
UPF3AQ9H1J1 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC22.23■■□□□ 1.15
UPF3AQ9H1J1 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC22.23■■□□□ 1.15
UPF3AQ9H1J1 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC22.23■■□□□ 1.15
UPF3AQ9H1J1 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC22.23■■□□□ 1.15
UPF3AQ9H1J1 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC22.23■■□□□ 1.15
UPF3AQ9H1J1 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
UPF3AQ9H1J1 CFL2-205ENST00000555765 632 ntTSL 2 BASIC22.23■■□□□ 1.15
UPF3AQ9H1J1 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
UPF3AQ9H1J1 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC22.23■■□□□ 1.15
UPF3AQ9H1J1 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC22.23■■□□□ 1.15
UPF3AQ9H1J1 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC22.23■■□□□ 1.15
UPF3AQ9H1J1 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
UPF3AQ9H1J1 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
UPF3AQ9H1J1 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
UPF3AQ9H1J1 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC22.23■■□□□ 1.15
UPF3AQ9H1J1 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
UPF3AQ9H1J1 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
UPF3AQ9H1J1 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
UPF3AQ9H1J1 RNF146-204ENST00000476956 884 ntTSL 2 BASIC22.22■■□□□ 1.15
UPF3AQ9H1J1 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC22.22■■□□□ 1.15
UPF3AQ9H1J1 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC22.22■■□□□ 1.15
UPF3AQ9H1J1 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
UPF3AQ9H1J1 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC22.22■■□□□ 1.15
UPF3AQ9H1J1 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
UPF3AQ9H1J1 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
UPF3AQ9H1J1 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
UPF3AQ9H1J1 FSCN1P1-201ENST00000568912 1481 ntBASIC22.22■■□□□ 1.15
UPF3AQ9H1J1 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC22.21■■□□□ 1.15
UPF3AQ9H1J1 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
UPF3AQ9H1J1 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
UPF3AQ9H1J1 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC22.21■■□□□ 1.15
UPF3AQ9H1J1 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
UPF3AQ9H1J1 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
UPF3AQ9H1J1 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
UPF3AQ9H1J1 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC22.21■■□□□ 1.15
UPF3AQ9H1J1 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
UPF3AQ9H1J1 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC22.21■■□□□ 1.15
UPF3AQ9H1J1 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC22.21■■□□□ 1.15
UPF3AQ9H1J1 AP005242.2-201ENST00000580065 1175 ntBASIC22.21■■□□□ 1.15
UPF3AQ9H1J1 ABBA01031674.1-201ENST00000635145 728 ntBASIC22.21■■□□□ 1.15
UPF3AQ9H1J1 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
UPF3AQ9H1J1 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
UPF3AQ9H1J1 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
UPF3AQ9H1J1 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
UPF3AQ9H1J1 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC22.21■■□□□ 1.15
UPF3AQ9H1J1 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
UPF3AQ9H1J1 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC22.21■■□□□ 1.15
UPF3AQ9H1J1 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC22.21■■□□□ 1.15
UPF3AQ9H1J1 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
UPF3AQ9H1J1 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms