Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
NPAS1Q99742 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
NPAS1Q99742 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NPAS1Q99742 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
NPAS1Q99742 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NPAS1Q99742 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC18.15■□□□□ 0.5
NPAS1Q99742 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
NPAS1Q99742 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NPAS1Q99742 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NPAS1Q99742 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
NPAS1Q99742 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NPAS1Q99742 CD99P1-205ENST00000527459 561 ntBASIC18.15■□□□□ 0.5
NPAS1Q99742 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.15■□□□□ 0.5
NPAS1Q99742 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
NPAS1Q99742 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.15■□□□□ 0.5
NPAS1Q99742 TBCB-214ENST00000629269 413 ntTSL 5 BASIC18.15■□□□□ 0.5
NPAS1Q99742 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
NPAS1Q99742 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NPAS1Q99742 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC18.15■□□□□ 0.5
NPAS1Q99742 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
NPAS1Q99742 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NPAS1Q99742 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.15■□□□□ 0.5
NPAS1Q99742 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NPAS1Q99742 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NPAS1Q99742 KRT8P17-201ENST00000453110 1448 ntBASIC18.15■□□□□ 0.5
NPAS1Q99742 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
NPAS1Q99742 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.14■□□□□ 0.5
NPAS1Q99742 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
NPAS1Q99742 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
NPAS1Q99742 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC18.14■□□□□ 0.49
NPAS1Q99742 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
NPAS1Q99742 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NPAS1Q99742 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NPAS1Q99742 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
NPAS1Q99742 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.14■□□□□ 0.49
NPAS1Q99742 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
NPAS1Q99742 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NPAS1Q99742 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.14■□□□□ 0.49
NPAS1Q99742 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.14■□□□□ 0.49
NPAS1Q99742 AC005829.2-201ENST00000571422 1056 ntBASIC18.14■□□□□ 0.49
NPAS1Q99742 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.14■□□□□ 0.49
NPAS1Q99742 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NPAS1Q99742 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NPAS1Q99742 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NPAS1Q99742 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NPAS1Q99742 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NPAS1Q99742 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NPAS1Q99742 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
NPAS1Q99742 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
NPAS1Q99742 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
NPAS1Q99742 BX119927.1-201ENST00000636596 1552 ntBASIC18.13■□□□□ 0.49
NPAS1Q99742 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
NPAS1Q99742 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
NPAS1Q99742 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
NPAS1Q99742 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.13■□□□□ 0.49
NPAS1Q99742 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
NPAS1Q99742 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC18.13■□□□□ 0.49
NPAS1Q99742 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
NPAS1Q99742 UNC93B5-201ENST00000530315 699 ntBASIC18.13■□□□□ 0.49
NPAS1Q99742 AC008403.3-201ENST00000598924 454 ntBASIC18.13■□□□□ 0.49
NPAS1Q99742 AL031963.3-201ENST00000606441 850 ntBASIC18.13■□□□□ 0.49
NPAS1Q99742 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
NPAS1Q99742 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
NPAS1Q99742 AC124283.5-201ENST00000624661 1809 ntBASIC18.13■□□□□ 0.49
NPAS1Q99742 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
NPAS1Q99742 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC18.13■□□□□ 0.49
NPAS1Q99742 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
NPAS1Q99742 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
NPAS1Q99742 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
NPAS1Q99742 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.13■□□□□ 0.49
NPAS1Q99742 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
NPAS1Q99742 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
NPAS1Q99742 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.12■□□□□ 0.49
NPAS1Q99742 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
NPAS1Q99742 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC18.12■□□□□ 0.49
NPAS1Q99742 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
NPAS1Q99742 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
NPAS1Q99742 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
NPAS1Q99742 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
NPAS1Q99742 AL691432.2-201ENST00000607222 2038 ntBASIC18.12■□□□□ 0.49
NPAS1Q99742 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC18.12■□□□□ 0.49
NPAS1Q99742 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
NPAS1Q99742 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.12■□□□□ 0.49
NPAS1Q99742 GAS7-202ENST00000396115 929 ntTSL 5 BASIC18.12■□□□□ 0.49
NPAS1Q99742 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
NPAS1Q99742 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.12■□□□□ 0.49
NPAS1Q99742 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
NPAS1Q99742 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC18.12■□□□□ 0.49
NPAS1Q99742 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.12■□□□□ 0.49
NPAS1Q99742 AC023632.3-201ENST00000521633 145 ntBASIC18.12■□□□□ 0.49
NPAS1Q99742 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
NPAS1Q99742 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC18.12■□□□□ 0.49
NPAS1Q99742 SOX15-203ENST00000570788 1093 ntBASIC18.12■□□□□ 0.49
NPAS1Q99742 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC18.12■□□□□ 0.49
NPAS1Q99742 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
NPAS1Q99742 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC18.12■□□□□ 0.49
NPAS1Q99742 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
NPAS1Q99742 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
NPAS1Q99742 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
NPAS1Q99742 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms