Protein–RNA interactions for Protein: P89105

CTR9, RNA polymerase-associated protein CTR9, yeastyeast

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CTR9P89105 tH(GUG)G2tH(GUG)G2 72 nt1.3□□□□□ -2.2
CTR9P89105 tH(GUG)HtH(GUG)H 72 nt1.3□□□□□ -2.2
CTR9P89105 tH(GUG)KtH(GUG)K 72 nt1.3□□□□□ -2.2
CTR9P89105 tH(GUG)MtH(GUG)M 72 nt1.3□□□□□ -2.2
CTR9P89105 YJL077W-AYJL077W-A 87 nt1.3□□□□□ -2.2
CTR9P89105 YPR117WYPR117W 7470 nt1.29□□□□□ -2.2
CTR9P89105 SIP4YJL089W 2490 nt1.29□□□□□ -2.2
CTR9P89105 NIP1YMR309C 2439 nt1.28□□□□□ -2.2
CTR9P89105 DOP1YDR141C 5097 nt1.27□□□□□ -2.21
CTR9P89105 VAM6YDL077C 3150 nt1.25□□□□□ -2.21
CTR9P89105 BUL2YML111W 2763 nt1.25□□□□□ -2.21
CTR9P89105 YJR029WYJR029W 5268 nt1.24□□□□□ -2.21
CTR9P89105 YPR137C-BYPR137C-B 5268 nt1.24□□□□□ -2.21
CTR9P89105 BUD3YCL014W 4911 nt1.23□□□□□ -2.21
CTR9P89105 IML1YJR138W 4755 nt1.21□□□□□ -2.22
CTR9P89105 PAU12YGR294W 363 nt1.19□□□□□ -2.22
CTR9P89105 tQ(UUG)QtQ(UUG)Q 76 nt1.19□□□□□ -2.22
CTR9P89105 ORC3YLL004W 1851 nt1.18□□□□□ -2.22
CTR9P89105 YHR180C-BYHR180C-B 105 nt1.17□□□□□ -2.22
CTR9P89105 snR64snR64 101 nt1.12□□□□□ -2.23
CTR9P89105 tV(UAC)BtV(UAC)B 74 nt1.12□□□□□ -2.23
CTR9P89105 tV(UAC)DtV(UAC)D 74 nt1.12□□□□□ -2.23
CTR9P89105 YML054C-AYML054C-A 159 nt1.12□□□□□ -2.23
CTR9P89105 RKR1YMR247C 4689 nt1.12□□□□□ -2.23
CTR9P89105 snR53snR53 91 nt1.11□□□□□ -2.23
CTR9P89105 LTE1YAL024C 4308 nt1.11□□□□□ -2.23
CTR9P89105 RPL41AYDL184C 78 nt1.09□□□□□ -2.23
CTR9P89105 EMT1tM(CAU)D 73 nt1.09□□□□□ -2.23
CTR9P89105 EMT5tM(CAU)J1 73 nt1.09□□□□□ -2.23
CTR9P89105 EMT3tM(CAU)J2 73 nt1.09□□□□□ -2.23
CTR9P89105 EMT4tM(CAU)M 73 nt1.09□□□□□ -2.23
CTR9P89105 EMT2tM(CAU)O2 73 nt1.09□□□□□ -2.23
CTR9P89105 PET111YMR257C 2403 nt1.09□□□□□ -2.24
CTR9P89105 YOR192C-BYOR192C-B 5313 nt1.09□□□□□ -2.24
CTR9P89105 YKL225WYKL225W 348 nt1.06□□□□□ -2.24
CTR9P89105 YBR296C-AYBR296C-A 120 nt1.04□□□□□ -2.24
CTR9P89105 snR50snR50 90 nt1.04□□□□□ -2.24
CTR9P89105 YDR371C-AYDR371C-A 105 nt1.02□□□□□ -2.25
CTR9P89105 YBR109W-AYBR109W-A 225 nt1.02□□□□□ -2.25
CTR9P89105 PAU24YBR301W 363 nt1.02□□□□□ -2.25
CTR9P89105 AI1Q0050 2505 nt1□□□□□ -2.25
CTR9P89105 YER090C-AYER090C-A 90 nt0.99□□□□□ -2.25
CTR9P89105 YPL060C-AYPL060C-A 3315 nt0.98□□□□□ -2.25
CTR9P89105 MLP1YKR095W 5628 nt0.96□□□□□ -2.26
CTR9P89105 MLP2YIL149C 5040 nt0.88□□□□□ -2.27
CTR9P89105 snR67snR67 82 nt0.86□□□□□ -2.27
CTR9P89105 snR38snR38 95 nt0.86□□□□□ -2.27
CTR9P89105 SKI7YOR076C 2244 nt0.84□□□□□ -2.27
CTR9P89105 YOR186C-AYOR186C-A 210 nt0.8□□□□□ -2.28
CTR9P89105 YPR159C-AYPR159C-A 102 nt0.79□□□□□ -2.28
CTR9P89105 YBL100W-BYBL100W-B 5313 nt0.76□□□□□ -2.29
CTR9P89105 tT(AGU)BtT(AGU)B 73 nt0.76□□□□□ -2.29
CTR9P89105 tT(AGU)CtT(AGU)C 73 nt0.76□□□□□ -2.29
CTR9P89105 tT(AGU)DtT(AGU)D 73 nt0.76□□□□□ -2.29
CTR9P89105 tT(AGU)HtT(AGU)H 73 nt0.76□□□□□ -2.29
CTR9P89105 tT(AGU)I1tT(AGU)I1 73 nt0.76□□□□□ -2.29
CTR9P89105 tT(AGU)I2tT(AGU)I2 73 nt0.76□□□□□ -2.29
CTR9P89105 tT(AGU)JtT(AGU)J 73 nt0.76□□□□□ -2.29
CTR9P89105 tT(AGU)N1tT(AGU)N1 73 nt0.76□□□□□ -2.29
CTR9P89105 tT(AGU)N2tT(AGU)N2 73 nt0.76□□□□□ -2.29
CTR9P89105 tT(AGU)O1tT(AGU)O1 73 nt0.76□□□□□ -2.29
CTR9P89105 tT(AGU)O2tT(AGU)O2 73 nt0.76□□□□□ -2.29
CTR9P89105 YMR272W-AYMR272W-A 114 nt0.75□□□□□ -2.29
CTR9P89105 MYO1YHR023W 5787 nt0.74□□□□□ -2.29
CTR9P89105 UTP20YBL004W 7482 nt0.73□□□□□ -2.29
CTR9P89105 YMR160WYMR160W 2451 nt0.72□□□□□ -2.29
CTR9P89105 YDL159W-AYDL159W-A 132 nt0.69□□□□□ -2.3
CTR9P89105 YGR122C-AYGR122C-A 129 nt0.68□□□□□ -2.3
CTR9P89105 UTP10YJL109C 5310 nt0.66□□□□□ -2.3
CTR9P89105 YNL054W-BYNL054W-B 5250 nt0.65□□□□□ -2.31
CTR9P89105 IQG1YPL242C 4488 nt0.63□□□□□ -2.31
CTR9P89105 YLR149C-AYLR149C-A 87 nt0.6□□□□□ -2.31
CTR9P89105 tF(GAA)BtF(GAA)B 73 nt0.57□□□□□ -2.32
CTR9P89105 tF(GAA)FtF(GAA)F 73 nt0.57□□□□□ -2.32
CTR9P89105 tF(GAA)GtF(GAA)G 73 nt0.57□□□□□ -2.32
CTR9P89105 tF(GAA)H1tF(GAA)H1 73 nt0.57□□□□□ -2.32
CTR9P89105 tF(GAA)H2tF(GAA)H2 73 nt0.57□□□□□ -2.32
CTR9P89105 tF(GAA)MtF(GAA)M 73 nt0.57□□□□□ -2.32
CTR9P89105 tF(GAA)P1tF(GAA)P1 73 nt0.57□□□□□ -2.32
CTR9P89105 tF(GAA)P2tF(GAA)P2 73 nt0.57□□□□□ -2.32
CTR9P89105 YKL096C-BYKL096C-B 150 nt0.54□□□□□ -2.32
CTR9P89105 YKL106C-AYKL106C-A 120 nt0.54□□□□□ -2.32
CTR9P89105 FMP27YLR454W 7887 nt0.54□□□□□ -2.32
CTR9P89105 YML100W-AYML100W-A 174 nt0.51□□□□□ -2.33
CTR9P89105 YKL145W-AYKL145W-A 93 nt0.46□□□□□ -2.34
CTR9P89105 snR128snR128 126 nt0.43□□□□□ -2.34
CTR9P89105 YOL014WYOL014W 375 nt0.4□□□□□ -2.35
CTR9P89105 SOV1YMR066W 2697 nt0.39□□□□□ -2.35
CTR9P89105 YOL013W-AYOL013W-A 192 nt0.38□□□□□ -2.35
CTR9P89105 PAU9YBL108C-A 129 nt0.35□□□□□ -2.35
CTR9P89105 YDL114W-AYDL114W-A 114 nt0.34□□□□□ -2.36
CTR9P89105 THO2YNL139C 4794 nt0.33□□□□□ -2.36
CTR9P89105 ESP1YGR098C 4893 nt0.31□□□□□ -2.36
CTR9P89105 snR75snR75 89 nt0.29□□□□□ -2.36
CTR9P89105 YER078W-AYER078W-A 165 nt0.28□□□□□ -2.36
CTR9P89105 YOR376W-AYOR376W-A 156 nt0.24□□□□□ -2.37
CTR9P89105 YOR316C-AYOR316C-A 210 nt0.2□□□□□ -2.38
CTR9P89105 tV(UAC)QtV(UAC)Q 76 nt0.16□□□□□ -2.38
CTR9P89105 SBH2YER019C-A 267 nt0.15□□□□□ -2.39
CTR9P89105 snR77snR77 88 nt0.07□□□□□ -2.4
Retrieved 100 of 7,029 protein–RNA pairs in 56 ms