Protein–RNA interactions for Protein: P47821

SSN8, RNA polymerase II holoenzyme cyclin-like subunit, yeastyeast

Predictions only

Length 323 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSN8P47821 tM(CAU)Q2tM(CAU)Q2 78 nt0.33□□□□□ -2.36
SSN8P47821 YOR225WYOR225W 330 nt0.33□□□□□ -2.36
SSN8P47821 BIR1YJR089W 2865 nt0.31□□□□□ -2.36
SSN8P47821 Q0032Q0032 291 nt0.28□□□□□ -2.36
SSN8P47821 YKL145W-AYKL145W-A 93 nt0.28□□□□□ -2.36
SSN8P47821 tF(GAA)BtF(GAA)B 73 nt0.27□□□□□ -2.37
SSN8P47821 tF(GAA)FtF(GAA)F 73 nt0.27□□□□□ -2.37
SSN8P47821 tF(GAA)GtF(GAA)G 73 nt0.27□□□□□ -2.37
SSN8P47821 tF(GAA)H1tF(GAA)H1 73 nt0.27□□□□□ -2.37
SSN8P47821 tF(GAA)H2tF(GAA)H2 73 nt0.27□□□□□ -2.37
SSN8P47821 tF(GAA)MtF(GAA)M 73 nt0.27□□□□□ -2.37
SSN8P47821 tF(GAA)P1tF(GAA)P1 73 nt0.27□□□□□ -2.37
SSN8P47821 tF(GAA)P2tF(GAA)P2 73 nt0.27□□□□□ -2.37
SSN8P47821 YNL067W-BYNL067W-B 141 nt0.27□□□□□ -2.37
SSN8P47821 YBR099CYBR099C 384 nt0.27□□□□□ -2.37
SSN8P47821 YGR146C-AYGR146C-A 162 nt0.25□□□□□ -2.37
SSN8P47821 SOV1YMR066W 2697 nt0.23□□□□□ -2.37
SSN8P47821 RPM2YML091C 3609 nt0.23□□□□□ -2.37
SSN8P47821 AI1Q0050 2505 nt0.22□□□□□ -2.37
SSN8P47821 EST1YLR233C 2100 nt0.21□□□□□ -2.38
SSN8P47821 YOL013W-AYOL013W-A 192 nt0.21□□□□□ -2.38
SSN8P47821 YLR294CYLR294C 330 nt0.19□□□□□ -2.38
SSN8P47821 YOR186C-AYOR186C-A 210 nt0.19□□□□□ -2.38
SSN8P47821 snR69snR69 101 nt0.15□□□□□ -2.39
SSN8P47821 THO2YNL139C 4794 nt0.15□□□□□ -2.39
SSN8P47821 PMP2YEL017C-A 132 nt0.14□□□□□ -2.39
SSN8P47821 YIL071W-AYIL071W-A 477 nt0.14□□□□□ -2.39
SSN8P47821 YOL014WYOL014W 375 nt0.13□□□□□ -2.39
SSN8P47821 YNL205CYNL205C 423 nt0.12□□□□□ -2.39
SSN8P47821 YGR164WYGR164W 336 nt0.1□□□□□ -2.39
SSN8P47821 SEC10YLR166C 2616 nt0.07□□□□□ -2.4
SSN8P47821 SOM1YEL059C-A 225 nt0.07□□□□□ -2.4
SSN8P47821 YJL077W-AYJL077W-A 87 nt0.06□□□□□ -2.4
SSN8P47821 tQ(UUG)QtQ(UUG)Q 76 nt0.05□□□□□ -2.4
SSN8P47821 YCL001W-BYCL001W-B 255 nt0.05□□□□□ -2.4
SSN8P47821 YBR178WYBR178W 375 nt0.04□□□□□ -2.4
SSN8P47821 tD(GUC)QtD(GUC)Q 75 nt0.03□□□□□ -2.4
SSN8P47821 YNL266WYNL266W 420 nt0.03□□□□□ -2.4
SSN8P47821 RDS3YPR094W 324 nt0.02□□□□□ -2.41
SSN8P47821 YCR095W-AYCR095W-A 159 nt0.01□□□□□ -2.41
SSN8P47821 snR128snR128 126 nt0.01□□□□□ -2.41
SSN8P47821 YER078W-AYER078W-A 165 nt-0.02□□□□□ -2.41
SSN8P47821 snR50snR50 90 nt-0.02□□□□□ -2.41
SSN8P47821 YER090C-AYER090C-A 90 nt-0.05□□□□□ -2.42
SSN8P47821 YLR286W-AYLR286W-A 135 nt-0.06□□□□□ -2.42
SSN8P47821 YBR196C-AYBR196C-A 150 nt-0.08□□□□□ -2.42
SSN8P47821 YDL159C-BYDL159C-B 177 nt-0.09□□□□□ -2.42
SSN8P47821 YML100W-AYML100W-A 174 nt-0.09□□□□□ -2.42
SSN8P47821 snR45snR45 172 nt-0.11□□□□□ -2.43
SSN8P47821 YNL170WYNL170W 396 nt-0.12□□□□□ -2.43
SSN8P47821 ATP8Q0080 147 nt-0.17□□□□□ -2.44
SSN8P47821 YLR299C-AYLR299C-A 93 nt-0.17□□□□□ -2.44
SSN8P47821 snR67snR67 82 nt-0.27□□□□□ -2.45
SSN8P47821 SBH2YER019C-A 267 nt-0.28□□□□□ -2.45
SSN8P47821 YML054C-AYML054C-A 159 nt-0.28□□□□□ -2.45
SSN8P47821 Q0092Q0092 141 nt-0.3□□□□□ -2.46
SSN8P47821 YBL071C-BYBL071C-B 99 nt-0.3□□□□□ -2.46
SSN8P47821 YOL083C-AYOL083C-A 141 nt-0.3□□□□□ -2.46
SSN8P47821 PAU9YBL108C-A 129 nt-0.31□□□□□ -2.46
SSN8P47821 YNL103W-AYNL103W-A 90 nt-0.32□□□□□ -2.46
SSN8P47821 SKI7YOR076C 2244 nt-0.32□□□□□ -2.46
SSN8P47821 tA(UGC)QtA(UGC)Q 76 nt-0.33□□□□□ -2.46
SSN8P47821 snR81snR81 201 nt-0.34□□□□□ -2.46
SSN8P47821 TFB5YDR079C-A 219 nt-0.37□□□□□ -2.47
SSN8P47821 YAL037C-AYAL037C-A 93 nt-0.38□□□□□ -2.47
SSN8P47821 YHR180C-BYHR180C-B 105 nt-0.4□□□□□ -2.47
SSN8P47821 YOL164W-AYOL164W-A 183 nt-0.42□□□□□ -2.48
SSN8P47821 YGL041C-BYGL041C-B 183 nt-0.45□□□□□ -2.48
SSN8P47821 YJL113WYJL113W 4647 nt-0.46□□□□□ -2.48
SSN8P47821 snR61snR61 90 nt-0.46□□□□□ -2.48
SSN8P47821 YBR109W-AYBR109W-A 225 nt-0.48□□□□□ -2.49
SSN8P47821 snR47snR47 99 nt-0.52□□□□□ -2.49
SSN8P47821 URB1YKL014C 5295 nt-0.53□□□□□ -2.49
SSN8P47821 Q0143Q0143 153 nt-0.53□□□□□ -2.49
SSN8P47821 snR38snR38 95 nt-0.54□□□□□ -2.5
SSN8P47821 YGR240C-AYGR240C-A 201 nt-0.56□□□□□ -2.5
SSN8P47821 RPL41AYDL184C 78 nt-0.58□□□□□ -2.5
SSN8P47821 YBR296C-AYBR296C-A 120 nt-0.59□□□□□ -2.5
SSN8P47821 tS(GCU)Q1tS(GCU)Q1 86 nt-0.61□□□□□ -2.51
SSN8P47821 YBL100W-CYBL100W-C 120 nt-0.63□□□□□ -2.51
SSN8P47821 YHL009W-BYHL009W-B 5409 nt-0.65□□□□□ -2.51
SSN8P47821 snR161snR161 161 nt-0.65□□□□□ -2.51
SSN8P47821 YOR376W-AYOR376W-A 156 nt-0.66□□□□□ -2.52
SSN8P47821 snR62snR62 100 nt-0.75□□□□□ -2.53
SSN8P47821 YDR034C-AYDR034C-A 177 nt-0.75□□□□□ -2.53
SSN8P47821 YKL106C-AYKL106C-A 120 nt-0.75□□□□□ -2.53
SSN8P47821 snR33snR33 183 nt-0.75□□□□□ -2.53
SSN8P47821 snR85snR85 171 nt-0.76□□□□□ -2.53
SSN8P47821 YKL225WYKL225W 348 nt-0.78□□□□□ -2.53
SSN8P47821 YMR326CYMR326C 309 nt-0.81□□□□□ -2.54
SSN8P47821 YHR217CYHR217C 462 nt-0.83□□□□□ -2.54
SSN8P47821 YBL109WYBL109W 336 nt-0.83□□□□□ -2.54
SSN8P47821 tT(UGU)G1tT(UGU)G1 72 nt-0.87□□□□□ -2.55
SSN8P47821 tT(UGU)G2tT(UGU)G2 72 nt-0.87□□□□□ -2.55
SSN8P47821 tT(UGU)PtT(UGU)P 72 nt-0.87□□□□□ -2.55
SSN8P47821 YOR316C-AYOR316C-A 210 nt-0.87□□□□□ -2.55
SSN8P47821 snR77snR77 88 nt-0.9□□□□□ -2.55
SSN8P47821 tP(UGG)QtP(UGG)Q 72 nt-0.97□□□□□ -2.56
SSN8P47821 CDC65tQ(CUG)M 72 nt-1□□□□□ -2.57
SSN8P47821 YDL159W-AYDL159W-A 132 nt-1.02□□□□□ -2.57
Retrieved 100 of 7,029 protein–RNA pairs in 34 ms