Protein–RNA interactions for Protein: P0CX71

TY1A-ER1, Transposon Ty1-ER1 Gag polyprotein, yeastyeast

Predictions only

Length 440 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
TY1A-ER1P0CX71 YHR180C-BYHR180C-B 105 nt1.15□□□□□ -2.23
TY1A-ER1P0CX71 SCC2YDR180W 4482 nt1.13□□□□□ -2.23
TY1A-ER1P0CX71 YPL060C-AYPL060C-A 3315 nt1.13□□□□□ -2.23
TY1A-ER1P0CX71 snR64snR64 101 nt1.12□□□□□ -2.23
TY1A-ER1P0CX71 snR53snR53 91 nt1.12□□□□□ -2.23
TY1A-ER1P0CX71 YNL284C-BYNL284C-B 5268 nt1.1□□□□□ -2.23
TY1A-ER1P0CX71 LTE1YAL024C 4308 nt1.09□□□□□ -2.23
TY1A-ER1P0CX71 BEM2YER155C 6504 nt1.09□□□□□ -2.24
TY1A-ER1P0CX71 YPR117WYPR117W 7470 nt1.08□□□□□ -2.24
TY1A-ER1P0CX71 RKR1YMR247C 4689 nt1.08□□□□□ -2.24
TY1A-ER1P0CX71 RPL41AYDL184C 78 nt1.07□□□□□ -2.24
TY1A-ER1P0CX71 YML054C-AYML054C-A 159 nt1.07□□□□□ -2.24
TY1A-ER1P0CX71 YOR192C-BYOR192C-B 5313 nt1.05□□□□□ -2.24
TY1A-ER1P0CX71 YKL225WYKL225W 348 nt1.05□□□□□ -2.24
TY1A-ER1P0CX71 PET111YMR257C 2403 nt1.04□□□□□ -2.24
TY1A-ER1P0CX71 VAM6YDL077C 3150 nt1.03□□□□□ -2.24
TY1A-ER1P0CX71 YBR296C-AYBR296C-A 120 nt1.02□□□□□ -2.25
TY1A-ER1P0CX71 YDR371C-AYDR371C-A 105 nt1.01□□□□□ -2.25
TY1A-ER1P0CX71 YBR109W-AYBR109W-A 225 nt1.01□□□□□ -2.25
TY1A-ER1P0CX71 snR50snR50 90 nt1.01□□□□□ -2.25
TY1A-ER1P0CX71 NUP192YJL039C 5052 nt1□□□□□ -2.25
TY1A-ER1P0CX71 YER090C-AYER090C-A 90 nt0.99□□□□□ -2.25
TY1A-ER1P0CX71 DOP1YDR141C 5097 nt0.97□□□□□ -2.25
TY1A-ER1P0CX71 YJR029WYJR029W 5268 nt0.94□□□□□ -2.26
TY1A-ER1P0CX71 YPR137C-BYPR137C-B 5268 nt0.94□□□□□ -2.26
TY1A-ER1P0CX71 BUD3YCL014W 4911 nt0.93□□□□□ -2.26
TY1A-ER1P0CX71 MLP1YKR095W 5628 nt0.93□□□□□ -2.26
TY1A-ER1P0CX71 PAU24YBR301W 363 nt0.93□□□□□ -2.26
TY1A-ER1P0CX71 AI1Q0050 2505 nt0.92□□□□□ -2.26
TY1A-ER1P0CX71 EMT1tM(CAU)D 73 nt0.91□□□□□ -2.26
TY1A-ER1P0CX71 EMT5tM(CAU)J1 73 nt0.91□□□□□ -2.26
TY1A-ER1P0CX71 EMT3tM(CAU)J2 73 nt0.91□□□□□ -2.26
TY1A-ER1P0CX71 EMT4tM(CAU)M 73 nt0.91□□□□□ -2.26
TY1A-ER1P0CX71 EMT2tM(CAU)O2 73 nt0.91□□□□□ -2.26
TY1A-ER1P0CX71 tH(GUG)E1tH(GUG)E1 72 nt0.89□□□□□ -2.27
TY1A-ER1P0CX71 tH(GUG)E2tH(GUG)E2 72 nt0.89□□□□□ -2.27
TY1A-ER1P0CX71 tH(GUG)G1tH(GUG)G1 72 nt0.89□□□□□ -2.27
TY1A-ER1P0CX71 tH(GUG)G2tH(GUG)G2 72 nt0.89□□□□□ -2.27
TY1A-ER1P0CX71 tH(GUG)HtH(GUG)H 72 nt0.89□□□□□ -2.27
TY1A-ER1P0CX71 tH(GUG)KtH(GUG)K 72 nt0.89□□□□□ -2.27
TY1A-ER1P0CX71 tH(GUG)MtH(GUG)M 72 nt0.89□□□□□ -2.27
TY1A-ER1P0CX71 MLP2YIL149C 5040 nt0.88□□□□□ -2.27
TY1A-ER1P0CX71 snR38snR38 95 nt0.86□□□□□ -2.27
TY1A-ER1P0CX71 SKI7YOR076C 2244 nt0.83□□□□□ -2.28
TY1A-ER1P0CX71 snR67snR67 82 nt0.81□□□□□ -2.28
TY1A-ER1P0CX71 YBL100W-BYBL100W-B 5313 nt0.79□□□□□ -2.28
TY1A-ER1P0CX71 tV(UAC)BtV(UAC)B 74 nt0.77□□□□□ -2.29
TY1A-ER1P0CX71 tV(UAC)DtV(UAC)D 74 nt0.77□□□□□ -2.29
TY1A-ER1P0CX71 YOR186C-AYOR186C-A 210 nt0.76□□□□□ -2.29
TY1A-ER1P0CX71 YNL054W-BYNL054W-B 5250 nt0.75□□□□□ -2.29
TY1A-ER1P0CX71 YPR159C-AYPR159C-A 102 nt0.74□□□□□ -2.29
TY1A-ER1P0CX71 IML1YJR138W 4755 nt0.73□□□□□ -2.29
TY1A-ER1P0CX71 IQG1YPL242C 4488 nt0.72□□□□□ -2.29
TY1A-ER1P0CX71 YDL159W-AYDL159W-A 132 nt0.72□□□□□ -2.29
TY1A-ER1P0CX71 YMR160WYMR160W 2451 nt0.71□□□□□ -2.3
TY1A-ER1P0CX71 YGR122C-AYGR122C-A 129 nt0.66□□□□□ -2.3
TY1A-ER1P0CX71 YLR149C-AYLR149C-A 87 nt0.65□□□□□ -2.31
TY1A-ER1P0CX71 MYO1YHR023W 5787 nt0.62□□□□□ -2.31
TY1A-ER1P0CX71 UTP10YJL109C 5310 nt0.6□□□□□ -2.31
TY1A-ER1P0CX71 YMR272W-AYMR272W-A 114 nt0.6□□□□□ -2.31
TY1A-ER1P0CX71 UTP20YBL004W 7482 nt0.59□□□□□ -2.32
TY1A-ER1P0CX71 YKL096C-BYKL096C-B 150 nt0.57□□□□□ -2.32
TY1A-ER1P0CX71 YKL106C-AYKL106C-A 120 nt0.51□□□□□ -2.33
TY1A-ER1P0CX71 YML100W-AYML100W-A 174 nt0.51□□□□□ -2.33
TY1A-ER1P0CX71 tT(AGU)BtT(AGU)B 73 nt0.48□□□□□ -2.33
TY1A-ER1P0CX71 tT(AGU)CtT(AGU)C 73 nt0.48□□□□□ -2.33
TY1A-ER1P0CX71 tT(AGU)DtT(AGU)D 73 nt0.48□□□□□ -2.33
TY1A-ER1P0CX71 tT(AGU)HtT(AGU)H 73 nt0.48□□□□□ -2.33
TY1A-ER1P0CX71 tT(AGU)I1tT(AGU)I1 73 nt0.48□□□□□ -2.33
TY1A-ER1P0CX71 tT(AGU)I2tT(AGU)I2 73 nt0.48□□□□□ -2.33
TY1A-ER1P0CX71 tT(AGU)JtT(AGU)J 73 nt0.48□□□□□ -2.33
TY1A-ER1P0CX71 tT(AGU)N1tT(AGU)N1 73 nt0.48□□□□□ -2.33
TY1A-ER1P0CX71 tT(AGU)N2tT(AGU)N2 73 nt0.48□□□□□ -2.33
TY1A-ER1P0CX71 tT(AGU)O1tT(AGU)O1 73 nt0.48□□□□□ -2.33
TY1A-ER1P0CX71 tT(AGU)O2tT(AGU)O2 73 nt0.48□□□□□ -2.33
TY1A-ER1P0CX71 SOV1YMR066W 2697 nt0.41□□□□□ -2.34
TY1A-ER1P0CX71 snR128snR128 126 nt0.4□□□□□ -2.35
TY1A-ER1P0CX71 ESP1YGR098C 4893 nt0.39□□□□□ -2.35
TY1A-ER1P0CX71 tF(GAA)BtF(GAA)B 73 nt0.36□□□□□ -2.35
TY1A-ER1P0CX71 tF(GAA)FtF(GAA)F 73 nt0.36□□□□□ -2.35
TY1A-ER1P0CX71 tF(GAA)GtF(GAA)G 73 nt0.36□□□□□ -2.35
TY1A-ER1P0CX71 tF(GAA)H1tF(GAA)H1 73 nt0.36□□□□□ -2.35
TY1A-ER1P0CX71 tF(GAA)H2tF(GAA)H2 73 nt0.36□□□□□ -2.35
TY1A-ER1P0CX71 tF(GAA)MtF(GAA)M 73 nt0.36□□□□□ -2.35
TY1A-ER1P0CX71 tF(GAA)P1tF(GAA)P1 73 nt0.36□□□□□ -2.35
TY1A-ER1P0CX71 tF(GAA)P2tF(GAA)P2 73 nt0.36□□□□□ -2.35
TY1A-ER1P0CX71 YKL145W-AYKL145W-A 93 nt0.36□□□□□ -2.35
TY1A-ER1P0CX71 YOL013W-AYOL013W-A 192 nt0.35□□□□□ -2.35
TY1A-ER1P0CX71 YDL114W-AYDL114W-A 114 nt0.34□□□□□ -2.36
TY1A-ER1P0CX71 FMP27YLR454W 7887 nt0.33□□□□□ -2.36
TY1A-ER1P0CX71 snR75snR75 89 nt0.31□□□□□ -2.36
TY1A-ER1P0CX71 PAU9YBL108C-A 129 nt0.31□□□□□ -2.36
TY1A-ER1P0CX71 YER078W-AYER078W-A 165 nt0.29□□□□□ -2.36
TY1A-ER1P0CX71 YOL014WYOL014W 375 nt0.27□□□□□ -2.37
TY1A-ER1P0CX71 YOR376W-AYOR376W-A 156 nt0.26□□□□□ -2.37
TY1A-ER1P0CX71 YOR316C-AYOR316C-A 210 nt0.23□□□□□ -2.37
TY1A-ER1P0CX71 tV(UAC)QtV(UAC)Q 76 nt0.21□□□□□ -2.38
TY1A-ER1P0CX71 THO2YNL139C 4794 nt0.19□□□□□ -2.38
TY1A-ER1P0CX71 SBH2YER019C-A 267 nt0.15□□□□□ -2.39
TY1A-ER1P0CX71 snR77snR77 88 nt0.1□□□□□ -2.39
Retrieved 100 of 7,029 protein–RNA pairs in 24.7 ms