Protein–RNA interactions for Protein: P0CH09

RPL40B, Ubiquitin-60S ribosomal protein L40, yeastyeast

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPL40BP0CH09 YEL014CYEL014C 306 nt-1.59□□□□□ -2.66
RPL40BP0CH09 YBR182C-AYBR182C-A 195 nt-1.59□□□□□ -2.66
RPL40BP0CH09 tD(GUC)QtD(GUC)Q 75 nt-1.6□□□□□ -2.67
RPL40BP0CH09 YFL019CYFL019C 354 nt-1.6□□□□□ -2.67
RPL40BP0CH09 YLR286W-AYLR286W-A 135 nt-1.62□□□□□ -2.67
RPL40BP0CH09 YOR008C-AYOR008C-A 225 nt-1.64□□□□□ -2.67
RPL40BP0CH09 YJR157WYJR157W 363 nt-1.66□□□□□ -2.68
RPL40BP0CH09 YML054C-AYML054C-A 159 nt-1.66□□□□□ -2.68
RPL40BP0CH09 tY(GUA)QtY(GUA)Q 84 nt-1.67□□□□□ -2.68
RPL40BP0CH09 YBR178WYBR178W 375 nt-1.68□□□□□ -2.68
RPL40BP0CH09 YDL159C-BYDL159C-B 177 nt-1.69□□□□□ -2.68
RPL40BP0CH09 YPL038W-AYPL038W-A 192 nt-1.69□□□□□ -2.68
RPL40BP0CH09 YOR329W-AYOR329W-A 210 nt-1.7□□□□□ -2.68
RPL40BP0CH09 YAL016C-BYAL016C-B 186 nt-1.71□□□□□ -2.68
RPL40BP0CH09 YGR240C-AYGR240C-A 201 nt-1.72□□□□□ -2.68
RPL40BP0CH09 CDC65tQ(CUG)M 72 nt-1.73□□□□□ -2.69
RPL40BP0CH09 YBR131C-AYBR131C-A 90 nt-1.73□□□□□ -2.69
RPL40BP0CH09 YNL205CYNL205C 423 nt-1.76□□□□□ -2.69
RPL40BP0CH09 YPR197CYPR197C 564 nt-1.76□□□□□ -2.69
RPL40BP0CH09 YER181CYER181C 324 nt-1.78□□□□□ -2.69
RPL40BP0CH09 tF(GAA)QtF(GAA)Q 75 nt-1.79□□□□□ -2.7
RPL40BP0CH09 snR77snR77 88 nt-1.82□□□□□ -2.7
RPL40BP0CH09 snR81snR81 201 nt-1.83□□□□□ -2.7
RPL40BP0CH09 RPL39YJL189W 156 nt-1.83□□□□□ -2.7
RPL40BP0CH09 YBR126W-BYBR126W-B 144 nt-1.84□□□□□ -2.7
RPL40BP0CH09 snR55snR55 98 nt-1.87□□□□□ -2.71
RPL40BP0CH09 YMR315W-AYMR315W-A 108 nt-1.87□□□□□ -2.71
RPL40BP0CH09 YDR157WYDR157W 402 nt-1.88□□□□□ -2.71
RPL40BP0CH09 YDR413CYDR413C 576 nt-1.89□□□□□ -2.71
RPL40BP0CH09 YLR299C-AYLR299C-A 93 nt-1.9□□□□□ -2.71
RPL40BP0CH09 YOR102WYOR102W 351 nt-1.9□□□□□ -2.71
RPL40BP0CH09 YBR196C-AYBR196C-A 150 nt-1.91□□□□□ -2.72
RPL40BP0CH09 YNL277W-AYNL277W-A 189 nt-1.94□□□□□ -2.72
RPL40BP0CH09 YLR222C-AYLR222C-A 231 nt-1.95□□□□□ -2.72
RPL40BP0CH09 YDL240C-AYDL240C-A 138 nt-1.96□□□□□ -2.72
RPL40BP0CH09 YGL188C-AYGL188C-A 141 nt-1.96□□□□□ -2.72
RPL40BP0CH09 YKL118WYKL118W 312 nt-1.98□□□□□ -2.73
RPL40BP0CH09 Q0017Q0017 162 nt-2□□□□□ -2.73
RPL40BP0CH09 snR48snR48 113 nt-2□□□□□ -2.73
RPL40BP0CH09 YNL097C-BYNL097C-B 123 nt-2.01□□□□□ -2.73
RPL40BP0CH09 YOR376W-AYOR376W-A 156 nt-2.03□□□□□ -2.73
RPL40BP0CH09 tL(UAA)QtL(UAA)Q 85 nt-2.08□□□□□ -2.74
RPL40BP0CH09 YOL155W-AYOL155W-A 135 nt-2.08□□□□□ -2.74
RPL40BP0CH09 GIM4YEL003W 336 nt-2.09□□□□□ -2.74
RPL40BP0CH09 YHR180C-BYHR180C-B 105 nt-2.11□□□□□ -2.75
RPL40BP0CH09 YLR342W-AYLR342W-A 174 nt-2.11□□□□□ -2.75
RPL40BP0CH09 snR52snR52 92 nt-2.12□□□□□ -2.75
RPL40BP0CH09 YHL015W-AYHL015W-A 84 nt-2.14□□□□□ -2.75
RPL40BP0CH09 YOR302WYOR302W 78 nt-2.16□□□□□ -2.76
RPL40BP0CH09 YDR118W-AYDR118W-A 117 nt-2.17□□□□□ -2.76
RPL40BP0CH09 YOR316C-AYOR316C-A 210 nt-2.2□□□□□ -2.76
RPL40BP0CH09 YKL106C-AYKL106C-A 120 nt-2.23□□□□□ -2.77
RPL40BP0CH09 YOR309CYOR309C 381 nt-2.25□□□□□ -2.77
RPL40BP0CH09 VAR1Q0140 1197 nt-2.28□□□□□ -2.77
RPL40BP0CH09 YPR012WYPR012W 255 nt-2.28□□□□□ -2.77
RPL40BP0CH09 YJL150WYJL150W 303 nt-2.3□□□□□ -2.78
RPL40BP0CH09 YPL152W-AYPL152W-A 99 nt-2.31□□□□□ -2.78
RPL40BP0CH09 snR65snR65 100 nt-2.36□□□□□ -2.79
RPL40BP0CH09 YNL198CYNL198C 303 nt-2.39□□□□□ -2.79
RPL40BP0CH09 SOM1YEL059C-A 225 nt-2.43□□□□□ -2.8
RPL40BP0CH09 snR56snR56 88 nt-2.47□□□□□ -2.8
RPL40BP0CH09 RPL41AYDL184C 78 nt-2.47□□□□□ -2.8
RPL40BP0CH09 YDR524W-CYDR524W-C 90 nt-2.48□□□□□ -2.81
RPL40BP0CH09 YBR109W-AYBR109W-A 225 nt-2.48□□□□□ -2.81
RPL40BP0CH09 YBR296C-AYBR296C-A 120 nt-2.48□□□□□ -2.81
RPL40BP0CH09 YCR095W-AYCR095W-A 159 nt-2.58□□□□□ -2.82
RPL40BP0CH09 YDR406W-AYDR406W-A 246 nt-2.58□□□□□ -2.82
RPL40BP0CH09 snR80snR80 171 nt-2.59□□□□□ -2.82
RPL40BP0CH09 YJR162CYJR162C 351 nt-2.63□□□□□ -2.83
RPL40BP0CH09 YNL337WYNL337W 255 nt-2.63□□□□□ -2.83
RPL40BP0CH09 snR6snR6 112 nt-2.69□□□□□ -2.84
RPL40BP0CH09 YBL053WYBL053W 375 nt-2.69□□□□□ -2.84
RPL40BP0CH09 YOL083C-AYOL083C-A 141 nt-2.7□□□□□ -2.84
RPL40BP0CH09 snR38snR38 95 nt-2.7□□□□□ -2.84
RPL40BP0CH09 RPL41BYDL133C-A 78 nt-2.73□□□□□ -2.85
RPL40BP0CH09 YGR151CYGR151C 336 nt-2.73□□□□□ -2.85
RPL40BP0CH09 YOR231C-AYOR231C-A 201 nt-2.75□□□□□ -2.85
RPL40BP0CH09 YHR175W-AYHR175W-A 150 nt-2.76□□□□□ -2.85
RPL40BP0CH09 YOR335W-AYOR335W-A 81 nt-2.78□□□□□ -2.85
RPL40BP0CH09 YBL071C-BYBL071C-B 99 nt-2.79□□□□□ -2.86
RPL40BP0CH09 YOL164W-AYOL164W-A 183 nt-2.8□□□□□ -2.86
RPL40BP0CH09 snR73snR73 106 nt-2.83□□□□□ -2.86
RPL40BP0CH09 snR47snR47 99 nt-2.84□□□□□ -2.86
RPL40BP0CH09 YBL100W-CYBL100W-C 120 nt-2.9□□□□□ -2.87
RPL40BP0CH09 tR(ACG)Q2tR(ACG)Q2 74 nt-2.91□□□□□ -2.88
RPL40BP0CH09 YAL037C-AYAL037C-A 93 nt-2.96□□□□□ -2.88
RPL40BP0CH09 Q0144Q0144 330 nt-2.99□□□□□ -2.89
RPL40BP0CH09 YDL114W-AYDL114W-A 114 nt-3.04□□□□□ -2.9
RPL40BP0CH09 snR85snR85 171 nt-3.07□□□□□ -2.9
RPL40BP0CH09 YCL001W-BYCL001W-B 255 nt-3.11□□□□□ -2.91
RPL40BP0CH09 YDR524C-AYDR524C-A 120 nt-3.12□□□□□ -2.91
RPL40BP0CH09 YKL225WYKL225W 348 nt-3.12□□□□□ -2.91
RPL40BP0CH09 YMR046W-AYMR046W-A 129 nt-3.12□□□□□ -2.91
RPL40BP0CH09 tV(UAC)QtV(UAC)Q 76 nt-3.13□□□□□ -2.91
RPL40BP0CH09 tS(GCU)Q1tS(GCU)Q1 86 nt-3.19□□□□□ -2.92
RPL40BP0CH09 SPG3YDR504C 384 nt-3.21□□□□□ -2.92
RPL40BP0CH09 YGR122C-AYGR122C-A 129 nt-3.46□□□□□ -2.96
RPL40BP0CH09 YLR466C-BYLR466C-B 117 nt-3.46□□□□□ -2.96
RPL40BP0CH09 YDR034C-AYDR034C-A 177 nt-3.5□□□□□ -2.97
RPL40BP0CH09 tM(CAU)Q1tM(CAU)Q1 76 nt-3.5□□□□□ -2.97
Retrieved 100 of 7,029 protein–RNA pairs in 88.3 ms