Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
VPS4BO75351 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS4BO75351 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS4BO75351 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS4BO75351 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS4BO75351 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.51■□□□□ 0.71
VPS4BO75351 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS4BO75351 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS4BO75351 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS4BO75351 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS4BO75351 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS4BO75351 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VPS4BO75351 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS4BO75351 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS4BO75351 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VPS4BO75351 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS4BO75351 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS4BO75351 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
VPS4BO75351 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.51■□□□□ 0.71
VPS4BO75351 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS4BO75351 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.51■□□□□ 0.71
VPS4BO75351 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS4BO75351 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.51■□□□□ 0.71
VPS4BO75351 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.51■□□□□ 0.71
VPS4BO75351 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VPS4BO75351 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS4BO75351 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
VPS4BO75351 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS4BO75351 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.51■□□□□ 0.71
VPS4BO75351 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS4BO75351 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS4BO75351 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.51■□□□□ 0.71
VPS4BO75351 RBM17P2-201ENST00000616397 1405 ntBASIC19.51■□□□□ 0.71
VPS4BO75351 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VPS4BO75351 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.5■□□□□ 0.71
VPS4BO75351 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
VPS4BO75351 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.5■□□□□ 0.71
VPS4BO75351 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.5■□□□□ 0.71
VPS4BO75351 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VPS4BO75351 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.5■□□□□ 0.71
VPS4BO75351 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS4BO75351 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.5■□□□□ 0.71
VPS4BO75351 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC19.5■□□□□ 0.71
VPS4BO75351 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
VPS4BO75351 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
VPS4BO75351 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
VPS4BO75351 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS4BO75351 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC19.5■□□□□ 0.71
VPS4BO75351 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.5■□□□□ 0.71
VPS4BO75351 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS4BO75351 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
VPS4BO75351 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VPS4BO75351 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.5■□□□□ 0.71
VPS4BO75351 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS4BO75351 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VPS4BO75351 PRORSD1P-201ENST00000295112 541 ntBASIC19.49■□□□□ 0.71
VPS4BO75351 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
VPS4BO75351 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS4BO75351 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC19.49■□□□□ 0.71
VPS4BO75351 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.49■□□□□ 0.71
VPS4BO75351 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VPS4BO75351 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.49■□□□□ 0.71
VPS4BO75351 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
VPS4BO75351 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.49■□□□□ 0.71
VPS4BO75351 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS4BO75351 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VPS4BO75351 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.49■□□□□ 0.71
VPS4BO75351 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.49■□□□□ 0.71
VPS4BO75351 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VPS4BO75351 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
VPS4BO75351 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.48■□□□□ 0.71
VPS4BO75351 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
VPS4BO75351 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
VPS4BO75351 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.48■□□□□ 0.71
VPS4BO75351 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS4BO75351 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS4BO75351 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC19.48■□□□□ 0.71
VPS4BO75351 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VPS4BO75351 AC098934.4-201ENST00000564127 592 ntBASIC19.48■□□□□ 0.71
VPS4BO75351 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS4BO75351 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS4BO75351 BX119927.1-201ENST00000636596 1552 ntBASIC19.48■□□□□ 0.71
VPS4BO75351 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS4BO75351 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.48■□□□□ 0.71
VPS4BO75351 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
VPS4BO75351 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.48■□□□□ 0.71
VPS4BO75351 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VPS4BO75351 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS4BO75351 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS4BO75351 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.47■□□□□ 0.71
VPS4BO75351 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS4BO75351 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VPS4BO75351 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS4BO75351 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.47■□□□□ 0.71
VPS4BO75351 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS4BO75351 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS4BO75351 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.47■□□□□ 0.71
VPS4BO75351 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS4BO75351 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.47■□□□□ 0.71
VPS4BO75351 PGM5P4-201ENST00000421970 445 ntBASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms