Protein–RNA interactions for Protein: Q9JLR1

Sec61a2, Protein transport protein Sec61 subunit alpha isoform 2, mousemouse

Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sec61a2Q9JLR1 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Sec61a2Q9JLR1 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Sec61a2Q9JLR1 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Sec61a2Q9JLR1 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Sec61a2Q9JLR1 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC21.35■■□□□ 1.01
Sec61a2Q9JLR1 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Sec61a2Q9JLR1 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Sec61a2Q9JLR1 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Sec61a2Q9JLR1 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Sec61a2Q9JLR1 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC21.31■■□□□ 1
Sec61a2Q9JLR1 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Sec61a2Q9JLR1 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC21.3■■□□□ 1
Sec61a2Q9JLR1 Pcf11-205ENSMUST00000208255 1720 ntBASIC21.3■■□□□ 1
Sec61a2Q9JLR1 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Sec61a2Q9JLR1 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Sec61a2Q9JLR1 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Sec61a2Q9JLR1 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Sec61a2Q9JLR1 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC21.28■■□□□ 1
Sec61a2Q9JLR1 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Sec61a2Q9JLR1 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Sec61a2Q9JLR1 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Sec61a2Q9JLR1 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Sec61a2Q9JLR1 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC21.26■□□□□ 0.99
Sec61a2Q9JLR1 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC21.25■□□□□ 0.99
Sec61a2Q9JLR1 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Sec61a2Q9JLR1 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Sec61a2Q9JLR1 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Sec61a2Q9JLR1 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Sec61a2Q9JLR1 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Sec61a2Q9JLR1 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC21.23■□□□□ 0.99
Sec61a2Q9JLR1 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Sec61a2Q9JLR1 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Sec61a2Q9JLR1 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Sec61a2Q9JLR1 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Sec61a2Q9JLR1 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC21.21■□□□□ 0.99
Sec61a2Q9JLR1 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Sec61a2Q9JLR1 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Sec61a2Q9JLR1 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Sec61a2Q9JLR1 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Sec61a2Q9JLR1 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
Sec61a2Q9JLR1 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Sec61a2Q9JLR1 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Sec61a2Q9JLR1 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Sec61a2Q9JLR1 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Sec61a2Q9JLR1 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Sec61a2Q9JLR1 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Sec61a2Q9JLR1 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Sec61a2Q9JLR1 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
Sec61a2Q9JLR1 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Sec61a2Q9JLR1 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Sec61a2Q9JLR1 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Sec61a2Q9JLR1 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC21.14■□□□□ 0.98
Sec61a2Q9JLR1 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Sec61a2Q9JLR1 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Sec61a2Q9JLR1 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Sec61a2Q9JLR1 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC21.13■□□□□ 0.97
Sec61a2Q9JLR1 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Sec61a2Q9JLR1 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Sec61a2Q9JLR1 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Sec61a2Q9JLR1 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Sec61a2Q9JLR1 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Sec61a2Q9JLR1 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Sec61a2Q9JLR1 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Sec61a2Q9JLR1 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC21.11■□□□□ 0.97
Sec61a2Q9JLR1 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Sec61a2Q9JLR1 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Sec61a2Q9JLR1 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Sec61a2Q9JLR1 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Sec61a2Q9JLR1 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Sec61a2Q9JLR1 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Sec61a2Q9JLR1 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Sec61a2Q9JLR1 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Sec61a2Q9JLR1 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
Sec61a2Q9JLR1 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Sec61a2Q9JLR1 Gm9939-201ENSMUST00000067161 1154 ntBASIC21.08■□□□□ 0.97
Sec61a2Q9JLR1 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC21.07■□□□□ 0.96
Sec61a2Q9JLR1 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Sec61a2Q9JLR1 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Sec61a2Q9JLR1 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Sec61a2Q9JLR1 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Sec61a2Q9JLR1 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
Sec61a2Q9JLR1 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
Sec61a2Q9JLR1 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Sec61a2Q9JLR1 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Sec61a2Q9JLR1 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Sec61a2Q9JLR1 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Sec61a2Q9JLR1 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Sec61a2Q9JLR1 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Sec61a2Q9JLR1 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Sec61a2Q9JLR1 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
Sec61a2Q9JLR1 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Sec61a2Q9JLR1 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC21.03■□□□□ 0.96
Sec61a2Q9JLR1 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Sec61a2Q9JLR1 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
Sec61a2Q9JLR1 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC21.02■□□□□ 0.96
Sec61a2Q9JLR1 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Sec61a2Q9JLR1 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Sec61a2Q9JLR1 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Sec61a2Q9JLR1 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Sec61a2Q9JLR1 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC21.01■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 25.7 ms