Protein–RNA interactions for Protein: Q8K2I2

Cchcr1, Coiled-coil alpha-helical rod protein 1, mousemouse

Predictions only

Length 770 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cchcr1Q8K2I2 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
Cchcr1Q8K2I2 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Cchcr1Q8K2I2 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC28.28■■■□□ 2.12
Cchcr1Q8K2I2 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Cchcr1Q8K2I2 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC28.27■■■□□ 2.12
Cchcr1Q8K2I2 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
Cchcr1Q8K2I2 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC28.26■■■□□ 2.11
Cchcr1Q8K2I2 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC28.25■■■□□ 2.11
Cchcr1Q8K2I2 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC28.25■■■□□ 2.11
Cchcr1Q8K2I2 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
Cchcr1Q8K2I2 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC28.25■■■□□ 2.11
Cchcr1Q8K2I2 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC28.24■■■□□ 2.11
Cchcr1Q8K2I2 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Cchcr1Q8K2I2 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC28.24■■■□□ 2.11
Cchcr1Q8K2I2 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC28.24■■■□□ 2.11
Cchcr1Q8K2I2 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC28.24■■■□□ 2.11
Cchcr1Q8K2I2 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
Cchcr1Q8K2I2 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
Cchcr1Q8K2I2 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC28.22■■■□□ 2.11
Cchcr1Q8K2I2 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
Cchcr1Q8K2I2 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
Cchcr1Q8K2I2 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
Cchcr1Q8K2I2 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
Cchcr1Q8K2I2 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC28.19■■■□□ 2.1
Cchcr1Q8K2I2 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
Cchcr1Q8K2I2 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC28.18■■■□□ 2.1
Cchcr1Q8K2I2 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
Cchcr1Q8K2I2 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Cchcr1Q8K2I2 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Cchcr1Q8K2I2 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
Cchcr1Q8K2I2 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC28.16■■■□□ 2.1
Cchcr1Q8K2I2 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
Cchcr1Q8K2I2 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC28.15■■■□□ 2.1
Cchcr1Q8K2I2 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC28.15■■■□□ 2.1
Cchcr1Q8K2I2 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC28.14■■■□□ 2.1
Cchcr1Q8K2I2 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC28.14■■■□□ 2.1
Cchcr1Q8K2I2 Gm45855-201ENSMUST00000212546 880 ntBASIC28.14■■■□□ 2.1
Cchcr1Q8K2I2 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
Cchcr1Q8K2I2 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
Cchcr1Q8K2I2 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC28.14■■■□□ 2.09
Cchcr1Q8K2I2 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC28.13■■■□□ 2.09
Cchcr1Q8K2I2 AC153890.1-201ENSMUST00000220021 2469 ntBASIC28.12■■■□□ 2.09
Cchcr1Q8K2I2 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
Cchcr1Q8K2I2 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC28.12■■■□□ 2.09
Cchcr1Q8K2I2 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
Cchcr1Q8K2I2 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC28.11■■■□□ 2.09
Cchcr1Q8K2I2 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC28.11■■■□□ 2.09
Cchcr1Q8K2I2 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
Cchcr1Q8K2I2 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
Cchcr1Q8K2I2 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC28.1■■■□□ 2.09
Cchcr1Q8K2I2 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
Cchcr1Q8K2I2 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC28.09■■■□□ 2.09
Cchcr1Q8K2I2 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
Cchcr1Q8K2I2 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
Cchcr1Q8K2I2 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC28.08■■■□□ 2.09
Cchcr1Q8K2I2 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
Cchcr1Q8K2I2 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC28.08■■■□□ 2.08
Cchcr1Q8K2I2 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC28.07■■■□□ 2.08
Cchcr1Q8K2I2 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC28.07■■■□□ 2.08
Cchcr1Q8K2I2 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC28.06■■■□□ 2.08
Cchcr1Q8K2I2 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
Cchcr1Q8K2I2 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
Cchcr1Q8K2I2 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
Cchcr1Q8K2I2 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC28.05■■■□□ 2.08
Cchcr1Q8K2I2 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
Cchcr1Q8K2I2 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC28.04■■■□□ 2.08
Cchcr1Q8K2I2 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
Cchcr1Q8K2I2 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
Cchcr1Q8K2I2 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
Cchcr1Q8K2I2 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC28.03■■■□□ 2.08
Cchcr1Q8K2I2 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC28.02■■■□□ 2.08
Cchcr1Q8K2I2 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC28.01■■■□□ 2.07
Cchcr1Q8K2I2 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC28.01■■■□□ 2.07
Cchcr1Q8K2I2 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
Cchcr1Q8K2I2 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC28■■■□□ 2.07
Cchcr1Q8K2I2 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
Cchcr1Q8K2I2 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
Cchcr1Q8K2I2 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC27.97■■■□□ 2.07
Cchcr1Q8K2I2 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC27.96■■■□□ 2.07
Cchcr1Q8K2I2 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
Cchcr1Q8K2I2 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC27.96■■■□□ 2.07
Cchcr1Q8K2I2 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.07
Cchcr1Q8K2I2 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC27.95■■■□□ 2.06
Cchcr1Q8K2I2 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
Cchcr1Q8K2I2 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
Cchcr1Q8K2I2 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC27.94■■■□□ 2.06
Cchcr1Q8K2I2 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC27.93■■■□□ 2.06
Cchcr1Q8K2I2 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC27.93■■■□□ 2.06
Cchcr1Q8K2I2 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC27.93■■■□□ 2.06
Cchcr1Q8K2I2 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
Cchcr1Q8K2I2 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC27.91■■■□□ 2.06
Cchcr1Q8K2I2 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC27.91■■■□□ 2.06
Cchcr1Q8K2I2 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
Cchcr1Q8K2I2 AC122428.3-201ENSMUST00000215551 2290 ntBASIC27.9■■■□□ 2.06
Cchcr1Q8K2I2 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
Cchcr1Q8K2I2 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC27.9■■■□□ 2.06
Cchcr1Q8K2I2 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC27.9■■■□□ 2.06
Cchcr1Q8K2I2 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC27.89■■■□□ 2.06
Cchcr1Q8K2I2 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC27.89■■■□□ 2.06
Cchcr1Q8K2I2 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC27.89■■■□□ 2.06
Retrieved 100 of 76,532 protein–RNA pairs in 10.1 ms