Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC26.85■■□□□ 1.89
Trim47Q8C0E3 Gm30023-201ENSMUST00000197970 889 ntBASIC26.85■■□□□ 1.89
Trim47Q8C0E3 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC26.84■■□□□ 1.89
Trim47Q8C0E3 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Trim47Q8C0E3 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC26.83■■□□□ 1.89
Trim47Q8C0E3 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Trim47Q8C0E3 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Trim47Q8C0E3 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Trim47Q8C0E3 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC26.82■■□□□ 1.88
Trim47Q8C0E3 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
Trim47Q8C0E3 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Trim47Q8C0E3 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
Trim47Q8C0E3 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Trim47Q8C0E3 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
Trim47Q8C0E3 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
Trim47Q8C0E3 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
Trim47Q8C0E3 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC26.78■■□□□ 1.88
Trim47Q8C0E3 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC26.78■■□□□ 1.88
Trim47Q8C0E3 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Trim47Q8C0E3 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC26.78■■□□□ 1.88
Trim47Q8C0E3 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC26.77■■□□□ 1.88
Trim47Q8C0E3 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC26.76■■□□□ 1.87
Trim47Q8C0E3 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
Trim47Q8C0E3 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
Trim47Q8C0E3 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC26.74■■□□□ 1.87
Trim47Q8C0E3 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC26.74■■□□□ 1.87
Trim47Q8C0E3 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC26.74■■□□□ 1.87
Trim47Q8C0E3 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC26.74■■□□□ 1.87
Trim47Q8C0E3 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC26.73■■□□□ 1.87
Trim47Q8C0E3 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
Trim47Q8C0E3 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
Trim47Q8C0E3 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
Trim47Q8C0E3 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
Trim47Q8C0E3 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
Trim47Q8C0E3 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC26.72■■□□□ 1.87
Trim47Q8C0E3 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC26.71■■□□□ 1.87
Trim47Q8C0E3 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC26.71■■□□□ 1.87
Trim47Q8C0E3 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC26.71■■□□□ 1.87
Trim47Q8C0E3 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
Trim47Q8C0E3 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC26.7■■□□□ 1.87
Trim47Q8C0E3 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC26.7■■□□□ 1.87
Trim47Q8C0E3 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC26.7■■□□□ 1.86
Trim47Q8C0E3 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
Trim47Q8C0E3 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC26.69■■□□□ 1.86
Trim47Q8C0E3 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC26.68■■□□□ 1.86
Trim47Q8C0E3 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
Trim47Q8C0E3 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC26.68■■□□□ 1.86
Trim47Q8C0E3 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC26.68■■□□□ 1.86
Trim47Q8C0E3 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC26.68■■□□□ 1.86
Trim47Q8C0E3 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Trim47Q8C0E3 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC26.66■■□□□ 1.86
Trim47Q8C0E3 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
Trim47Q8C0E3 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
Trim47Q8C0E3 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC26.64■■□□□ 1.86
Trim47Q8C0E3 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC26.64■■□□□ 1.85
Trim47Q8C0E3 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC26.63■■□□□ 1.85
Trim47Q8C0E3 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC26.63■■□□□ 1.85
Trim47Q8C0E3 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
Trim47Q8C0E3 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Trim47Q8C0E3 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC26.6■■□□□ 1.85
Trim47Q8C0E3 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC26.6■■□□□ 1.85
Trim47Q8C0E3 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Trim47Q8C0E3 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
Trim47Q8C0E3 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
Trim47Q8C0E3 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Trim47Q8C0E3 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
Trim47Q8C0E3 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Trim47Q8C0E3 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC26.55■■□□□ 1.84
Trim47Q8C0E3 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
Trim47Q8C0E3 Gm7432-201ENSMUST00000210343 879 ntBASIC26.54■■□□□ 1.84
Trim47Q8C0E3 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Trim47Q8C0E3 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
Trim47Q8C0E3 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Trim47Q8C0E3 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Trim47Q8C0E3 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC26.52■■□□□ 1.84
Trim47Q8C0E3 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC26.52■■□□□ 1.84
Trim47Q8C0E3 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.84
Trim47Q8C0E3 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
Trim47Q8C0E3 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
Trim47Q8C0E3 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Trim47Q8C0E3 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC26.51■■□□□ 1.83
Trim47Q8C0E3 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Trim47Q8C0E3 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Trim47Q8C0E3 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
Trim47Q8C0E3 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC26.48■■□□□ 1.83
Trim47Q8C0E3 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC26.48■■□□□ 1.83
Trim47Q8C0E3 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC26.48■■□□□ 1.83
Trim47Q8C0E3 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Trim47Q8C0E3 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
Trim47Q8C0E3 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC26.47■■□□□ 1.83
Trim47Q8C0E3 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC26.47■■□□□ 1.83
Trim47Q8C0E3 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC26.47■■□□□ 1.83
Trim47Q8C0E3 Gm5987-201ENSMUST00000196433 1151 ntBASIC26.47■■□□□ 1.83
Trim47Q8C0E3 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC26.47■■□□□ 1.83
Trim47Q8C0E3 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC26.46■■□□□ 1.83
Trim47Q8C0E3 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
Trim47Q8C0E3 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
Trim47Q8C0E3 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
Trim47Q8C0E3 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC26.44■■□□□ 1.82
Trim47Q8C0E3 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC26.44■■□□□ 1.82
Retrieved 100 of 76,532 protein–RNA pairs in 86.7 ms