Protein–RNA interactions for Protein: Q64347

Clcn1, Chloride channel protein 1, mousemouse

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn1Q64347 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
Clcn1Q64347 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
Clcn1Q64347 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
Clcn1Q64347 AC131739.1-201ENSMUST00000221692 1245 ntBASIC30.73■■■□□ 2.51
Clcn1Q64347 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC30.73■■■□□ 2.51
Clcn1Q64347 Cap2-205ENSMUST00000225824 1634 ntBASIC30.73■■■□□ 2.51
Clcn1Q64347 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC30.72■■■□□ 2.51
Clcn1Q64347 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC30.71■■■□□ 2.51
Clcn1Q64347 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
Clcn1Q64347 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
Clcn1Q64347 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
Clcn1Q64347 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC30.71■■■□□ 2.51
Clcn1Q64347 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
Clcn1Q64347 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC30.7■■■□□ 2.51
Clcn1Q64347 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
Clcn1Q64347 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Clcn1Q64347 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
Clcn1Q64347 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC30.68■■■□□ 2.5
Clcn1Q64347 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC30.68■■■□□ 2.5
Clcn1Q64347 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
Clcn1Q64347 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC30.67■■■□□ 2.5
Clcn1Q64347 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC30.66■■■□□ 2.5
Clcn1Q64347 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC30.66■■■□□ 2.5
Clcn1Q64347 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC30.66■■■□□ 2.5
Clcn1Q64347 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC30.66■■■□□ 2.5
Clcn1Q64347 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
Clcn1Q64347 Gm6311-201ENSMUST00000073790 878 ntBASIC30.65■■■□□ 2.5
Clcn1Q64347 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
Clcn1Q64347 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
Clcn1Q64347 AC153504.1-201ENSMUST00000218379 2290 ntBASIC30.63■■■□□ 2.49
Clcn1Q64347 AC167019.3-201ENSMUST00000228225 1266 ntBASIC30.62■■■□□ 2.49
Clcn1Q64347 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
Clcn1Q64347 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC30.61■■■□□ 2.49
Clcn1Q64347 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
Clcn1Q64347 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
Clcn1Q64347 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC30.6■■■□□ 2.49
Clcn1Q64347 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
Clcn1Q64347 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC30.59■■■□□ 2.49
Clcn1Q64347 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
Clcn1Q64347 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC30.58■■■□□ 2.49
Clcn1Q64347 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC30.57■■■□□ 2.48
Clcn1Q64347 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Clcn1Q64347 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC30.56■■■□□ 2.48
Clcn1Q64347 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC30.56■■■□□ 2.48
Clcn1Q64347 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC30.56■■■□□ 2.48
Clcn1Q64347 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Clcn1Q64347 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
Clcn1Q64347 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
Clcn1Q64347 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Clcn1Q64347 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC30.52■■■□□ 2.48
Clcn1Q64347 Pcf11-205ENSMUST00000208255 1720 ntBASIC30.52■■■□□ 2.48
Clcn1Q64347 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
Clcn1Q64347 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
Clcn1Q64347 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC30.51■■■□□ 2.47
Clcn1Q64347 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
Clcn1Q64347 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
Clcn1Q64347 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC30.49■■■□□ 2.47
Clcn1Q64347 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
Clcn1Q64347 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC30.49■■■□□ 2.47
Clcn1Q64347 Particl-201ENSMUST00000205370 1560 ntBASIC30.49■■■□□ 2.47
Clcn1Q64347 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
Clcn1Q64347 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC30.48■■■□□ 2.47
Clcn1Q64347 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
Clcn1Q64347 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
Clcn1Q64347 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
Clcn1Q64347 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC30.47■■■□□ 2.47
Clcn1Q64347 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
Clcn1Q64347 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
Clcn1Q64347 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
Clcn1Q64347 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC30.45■■■□□ 2.47
Clcn1Q64347 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC30.45■■■□□ 2.47
Clcn1Q64347 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC30.44■■■□□ 2.46
Clcn1Q64347 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Clcn1Q64347 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
Clcn1Q64347 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC30.43■■■□□ 2.46
Clcn1Q64347 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC30.43■■■□□ 2.46
Clcn1Q64347 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
Clcn1Q64347 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
Clcn1Q64347 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC30.42■■■□□ 2.46
Clcn1Q64347 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC30.41■■■□□ 2.46
Clcn1Q64347 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
Clcn1Q64347 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Clcn1Q64347 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
Clcn1Q64347 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC30.36■■■□□ 2.45
Clcn1Q64347 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Clcn1Q64347 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Clcn1Q64347 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
Clcn1Q64347 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC30.34■■■□□ 2.45
Clcn1Q64347 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
Clcn1Q64347 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
Clcn1Q64347 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
Clcn1Q64347 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC30.3■■■□□ 2.44
Clcn1Q64347 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC30.29■■■□□ 2.44
Clcn1Q64347 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
Clcn1Q64347 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
Clcn1Q64347 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC30.28■■■□□ 2.44
Clcn1Q64347 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC30.28■■■□□ 2.44
Clcn1Q64347 Scarna2-201ENSMUST00000157560 414 ntBASIC30.27■■■□□ 2.44
Clcn1Q64347 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
Clcn1Q64347 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
Retrieved 100 of 76,532 protein–RNA pairs in 63.2 ms