Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
Upf3bQ3ULL6 Gm9939-201ENSMUST00000067161 1154 ntBASIC25.66■■□□□ 1.7
Upf3bQ3ULL6 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Upf3bQ3ULL6 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
Upf3bQ3ULL6 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
Upf3bQ3ULL6 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Upf3bQ3ULL6 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC25.63■■□□□ 1.69
Upf3bQ3ULL6 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Upf3bQ3ULL6 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC25.62■■□□□ 1.69
Upf3bQ3ULL6 Nkain2-201ENSMUST00000092602 558 ntBASIC25.62■■□□□ 1.69
Upf3bQ3ULL6 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC25.61■■□□□ 1.69
Upf3bQ3ULL6 Gm42809-201ENSMUST00000198429 1138 ntBASIC25.61■■□□□ 1.69
Upf3bQ3ULL6 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Upf3bQ3ULL6 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC25.61■■□□□ 1.69
Upf3bQ3ULL6 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC25.61■■□□□ 1.69
Upf3bQ3ULL6 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Upf3bQ3ULL6 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC25.6■■□□□ 1.69
Upf3bQ3ULL6 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Upf3bQ3ULL6 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC25.59■■□□□ 1.69
Upf3bQ3ULL6 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC25.59■■□□□ 1.69
Upf3bQ3ULL6 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC25.59■■□□□ 1.69
Upf3bQ3ULL6 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Upf3bQ3ULL6 Fezf2-202ENSMUST00000224023 1917 ntBASIC25.59■■□□□ 1.69
Upf3bQ3ULL6 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC25.58■■□□□ 1.69
Upf3bQ3ULL6 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC25.56■■□□□ 1.68
Upf3bQ3ULL6 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC25.56■■□□□ 1.68
Upf3bQ3ULL6 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC25.55■■□□□ 1.68
Upf3bQ3ULL6 Gm30023-201ENSMUST00000197970 889 ntBASIC25.55■■□□□ 1.68
Upf3bQ3ULL6 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Upf3bQ3ULL6 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC25.54■■□□□ 1.68
Upf3bQ3ULL6 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
Upf3bQ3ULL6 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
Upf3bQ3ULL6 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
Upf3bQ3ULL6 Gm6821-201ENSMUST00000107540 542 ntBASIC25.53■■□□□ 1.68
Upf3bQ3ULL6 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
Upf3bQ3ULL6 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC25.52■■□□□ 1.68
Upf3bQ3ULL6 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Upf3bQ3ULL6 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Upf3bQ3ULL6 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
Upf3bQ3ULL6 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
Upf3bQ3ULL6 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC25.5■■□□□ 1.67
Upf3bQ3ULL6 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
Upf3bQ3ULL6 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC25.49■■□□□ 1.67
Upf3bQ3ULL6 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC25.49■■□□□ 1.67
Upf3bQ3ULL6 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Upf3bQ3ULL6 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC25.47■■□□□ 1.67
Upf3bQ3ULL6 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
Upf3bQ3ULL6 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC25.46■■□□□ 1.67
Upf3bQ3ULL6 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
Upf3bQ3ULL6 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
Upf3bQ3ULL6 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
Upf3bQ3ULL6 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
Upf3bQ3ULL6 Gm8503-201ENSMUST00000118131 455 ntBASIC25.44■■□□□ 1.66
Upf3bQ3ULL6 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
Upf3bQ3ULL6 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC25.44■■□□□ 1.66
Upf3bQ3ULL6 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC25.43■■□□□ 1.66
Upf3bQ3ULL6 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC25.42■■□□□ 1.66
Upf3bQ3ULL6 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC25.42■■□□□ 1.66
Upf3bQ3ULL6 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
Upf3bQ3ULL6 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC25.42■■□□□ 1.66
Upf3bQ3ULL6 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
Upf3bQ3ULL6 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC25.4■■□□□ 1.66
Upf3bQ3ULL6 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC25.4■■□□□ 1.66
Upf3bQ3ULL6 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Upf3bQ3ULL6 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC25.4■■□□□ 1.66
Upf3bQ3ULL6 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC25.39■■□□□ 1.66
Upf3bQ3ULL6 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC25.39■■□□□ 1.65
Upf3bQ3ULL6 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
Upf3bQ3ULL6 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC25.39■■□□□ 1.65
Upf3bQ3ULL6 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
Upf3bQ3ULL6 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC25.38■■□□□ 1.65
Upf3bQ3ULL6 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Upf3bQ3ULL6 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC25.38■■□□□ 1.65
Upf3bQ3ULL6 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Upf3bQ3ULL6 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC25.37■■□□□ 1.65
Upf3bQ3ULL6 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
Upf3bQ3ULL6 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC25.37■■□□□ 1.65
Upf3bQ3ULL6 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
Upf3bQ3ULL6 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
Upf3bQ3ULL6 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC25.36■■□□□ 1.65
Upf3bQ3ULL6 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC25.36■■□□□ 1.65
Upf3bQ3ULL6 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC25.35■■□□□ 1.65
Upf3bQ3ULL6 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC25.35■■□□□ 1.65
Upf3bQ3ULL6 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
Upf3bQ3ULL6 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
Upf3bQ3ULL6 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC25.34■■□□□ 1.65
Upf3bQ3ULL6 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC25.33■■□□□ 1.65
Upf3bQ3ULL6 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
Upf3bQ3ULL6 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.64
Upf3bQ3ULL6 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
Upf3bQ3ULL6 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC25.32■■□□□ 1.64
Upf3bQ3ULL6 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC25.31■■□□□ 1.64
Upf3bQ3ULL6 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Upf3bQ3ULL6 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
Upf3bQ3ULL6 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Upf3bQ3ULL6 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC25.28■■□□□ 1.64
Upf3bQ3ULL6 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
Upf3bQ3ULL6 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC25.26■■□□□ 1.63
Upf3bQ3ULL6 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC25.26■■□□□ 1.63
Upf3bQ3ULL6 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
Retrieved 100 of 76,532 protein–RNA pairs in 92.3 ms