Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Upf3aQ3ULJ3 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
Upf3aQ3ULJ3 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC25.69■■□□□ 1.7
Upf3aQ3ULJ3 Pcf11-205ENSMUST00000208255 1720 ntBASIC25.68■■□□□ 1.7
Upf3aQ3ULJ3 Particl-201ENSMUST00000205370 1560 ntBASIC25.67■■□□□ 1.7
Upf3aQ3ULJ3 AC167019.3-201ENSMUST00000228225 1266 ntBASIC25.67■■□□□ 1.7
Upf3aQ3ULJ3 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC25.67■■□□□ 1.7
Upf3aQ3ULJ3 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC25.65■■□□□ 1.7
Upf3aQ3ULJ3 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC25.65■■□□□ 1.7
Upf3aQ3ULJ3 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC25.64■■□□□ 1.7
Upf3aQ3ULJ3 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.69
Upf3aQ3ULJ3 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
Upf3aQ3ULJ3 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
Upf3aQ3ULJ3 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC25.63■■□□□ 1.69
Upf3aQ3ULJ3 Gm6311-201ENSMUST00000073790 878 ntBASIC25.63■■□□□ 1.69
Upf3aQ3ULJ3 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC25.63■■□□□ 1.69
Upf3aQ3ULJ3 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC25.62■■□□□ 1.69
Upf3aQ3ULJ3 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Upf3aQ3ULJ3 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC25.6■■□□□ 1.69
Upf3aQ3ULJ3 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC25.6■■□□□ 1.69
Upf3aQ3ULJ3 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
Upf3aQ3ULJ3 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
Upf3aQ3ULJ3 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Upf3aQ3ULJ3 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC25.58■■□□□ 1.69
Upf3aQ3ULJ3 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC25.58■■□□□ 1.69
Upf3aQ3ULJ3 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Upf3aQ3ULJ3 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
Upf3aQ3ULJ3 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
Upf3aQ3ULJ3 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC25.57■■□□□ 1.68
Upf3aQ3ULJ3 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
Upf3aQ3ULJ3 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Upf3aQ3ULJ3 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Upf3aQ3ULJ3 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Upf3aQ3ULJ3 Cap2-205ENSMUST00000225824 1634 ntBASIC25.55■■□□□ 1.68
Upf3aQ3ULJ3 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
Upf3aQ3ULJ3 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
Upf3aQ3ULJ3 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC25.53■■□□□ 1.68
Upf3aQ3ULJ3 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC25.53■■□□□ 1.68
Upf3aQ3ULJ3 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
Upf3aQ3ULJ3 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
Upf3aQ3ULJ3 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Upf3aQ3ULJ3 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
Upf3aQ3ULJ3 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC25.52■■□□□ 1.68
Upf3aQ3ULJ3 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
Upf3aQ3ULJ3 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC25.51■■□□□ 1.67
Upf3aQ3ULJ3 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Upf3aQ3ULJ3 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC25.5■■□□□ 1.67
Upf3aQ3ULJ3 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
Upf3aQ3ULJ3 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC25.49■■□□□ 1.67
Upf3aQ3ULJ3 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
Upf3aQ3ULJ3 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC25.49■■□□□ 1.67
Upf3aQ3ULJ3 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
Upf3aQ3ULJ3 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC25.47■■□□□ 1.67
Upf3aQ3ULJ3 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Upf3aQ3ULJ3 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Upf3aQ3ULJ3 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC25.45■■□□□ 1.67
Upf3aQ3ULJ3 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC25.45■■□□□ 1.66
Upf3aQ3ULJ3 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC25.45■■□□□ 1.66
Upf3aQ3ULJ3 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
Upf3aQ3ULJ3 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC25.44■■□□□ 1.66
Upf3aQ3ULJ3 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC25.43■■□□□ 1.66
Upf3aQ3ULJ3 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
Upf3aQ3ULJ3 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC25.42■■□□□ 1.66
Upf3aQ3ULJ3 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Upf3aQ3ULJ3 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Upf3aQ3ULJ3 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC25.41■■□□□ 1.66
Upf3aQ3ULJ3 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Upf3aQ3ULJ3 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Upf3aQ3ULJ3 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
Upf3aQ3ULJ3 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC25.39■■□□□ 1.66
Upf3aQ3ULJ3 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC25.39■■□□□ 1.66
Upf3aQ3ULJ3 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC25.39■■□□□ 1.66
Upf3aQ3ULJ3 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
Upf3aQ3ULJ3 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Upf3aQ3ULJ3 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Upf3aQ3ULJ3 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Upf3aQ3ULJ3 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Upf3aQ3ULJ3 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC25.35■■□□□ 1.65
Upf3aQ3ULJ3 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
Upf3aQ3ULJ3 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
Upf3aQ3ULJ3 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Upf3aQ3ULJ3 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Upf3aQ3ULJ3 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC25.34■■□□□ 1.65
Upf3aQ3ULJ3 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
Upf3aQ3ULJ3 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC25.33■■□□□ 1.65
Upf3aQ3ULJ3 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC25.33■■□□□ 1.65
Upf3aQ3ULJ3 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.64
Upf3aQ3ULJ3 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC25.32■■□□□ 1.64
Upf3aQ3ULJ3 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Upf3aQ3ULJ3 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
Upf3aQ3ULJ3 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
Upf3aQ3ULJ3 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
Upf3aQ3ULJ3 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Upf3aQ3ULJ3 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
Upf3aQ3ULJ3 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
Upf3aQ3ULJ3 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Upf3aQ3ULJ3 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Upf3aQ3ULJ3 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
Upf3aQ3ULJ3 Scarna2-201ENSMUST00000157560 414 ntBASIC25.28■■□□□ 1.64
Upf3aQ3ULJ3 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC25.28■■□□□ 1.64
Retrieved 100 of 76,532 protein–RNA pairs in 42.7 ms