Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC25.97■■□□□ 1.75
RaraP11416 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC25.96■■□□□ 1.75
RaraP11416 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
RaraP11416 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC25.95■■□□□ 1.74
RaraP11416 Gm43863-201ENSMUST00000203822 1192 ntBASIC25.95■■□□□ 1.74
RaraP11416 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC25.95■■□□□ 1.74
RaraP11416 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
RaraP11416 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC25.94■■□□□ 1.74
RaraP11416 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC25.94■■□□□ 1.74
RaraP11416 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC25.93■■□□□ 1.74
RaraP11416 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
RaraP11416 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
RaraP11416 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
RaraP11416 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
RaraP11416 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC25.9■■□□□ 1.74
RaraP11416 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
RaraP11416 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
RaraP11416 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC25.89■■□□□ 1.74
RaraP11416 Zfp131-205ENSMUST00000223812 663 ntBASIC25.89■■□□□ 1.74
RaraP11416 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
RaraP11416 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
RaraP11416 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
RaraP11416 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
RaraP11416 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC25.88■■□□□ 1.73
RaraP11416 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC25.85■■□□□ 1.73
RaraP11416 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC25.85■■□□□ 1.73
RaraP11416 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC25.85■■□□□ 1.73
RaraP11416 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
RaraP11416 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC25.84■■□□□ 1.73
RaraP11416 AC157572.2-201ENSMUST00000226970 908 ntBASIC25.84■■□□□ 1.73
RaraP11416 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC25.83■■□□□ 1.73
RaraP11416 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC25.83■■□□□ 1.73
RaraP11416 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC25.82■■□□□ 1.72
RaraP11416 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
RaraP11416 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
RaraP11416 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC25.81■■□□□ 1.72
RaraP11416 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
RaraP11416 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC25.81■■□□□ 1.72
RaraP11416 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
RaraP11416 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC25.8■■□□□ 1.72
RaraP11416 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
RaraP11416 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
RaraP11416 Gm9397-201ENSMUST00000200125 605 ntBASIC25.79■■□□□ 1.72
RaraP11416 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
RaraP11416 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
RaraP11416 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC25.78■■□□□ 1.72
RaraP11416 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC25.77■■□□□ 1.72
RaraP11416 AC122428.3-201ENSMUST00000215551 2290 ntBASIC25.77■■□□□ 1.72
RaraP11416 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC25.76■■□□□ 1.71
RaraP11416 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC25.76■■□□□ 1.71
RaraP11416 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC25.76■■□□□ 1.71
RaraP11416 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC25.75■■□□□ 1.71
RaraP11416 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
RaraP11416 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC25.75■■□□□ 1.71
RaraP11416 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
RaraP11416 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC25.73■■□□□ 1.71
RaraP11416 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
RaraP11416 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC25.73■■□□□ 1.71
RaraP11416 Gm24970-201ENSMUST00000175582 82 ntBASIC25.71■■□□□ 1.71
RaraP11416 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC25.71■■□□□ 1.71
RaraP11416 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC25.7■■□□□ 1.71
RaraP11416 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.7
RaraP11416 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
RaraP11416 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC25.69■■□□□ 1.7
RaraP11416 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
RaraP11416 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC25.68■■□□□ 1.7
RaraP11416 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
RaraP11416 Tdp2-203ENSMUST00000223804 1136 ntBASIC25.66■■□□□ 1.7
RaraP11416 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
RaraP11416 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
RaraP11416 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
RaraP11416 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
RaraP11416 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
RaraP11416 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC25.64■■□□□ 1.7
RaraP11416 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
RaraP11416 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC25.63■■□□□ 1.69
RaraP11416 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
RaraP11416 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC25.62■■□□□ 1.69
RaraP11416 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC25.61■■□□□ 1.69
RaraP11416 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC25.61■■□□□ 1.69
RaraP11416 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
RaraP11416 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC25.6■■□□□ 1.69
RaraP11416 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC25.6■■□□□ 1.69
RaraP11416 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC25.59■■□□□ 1.69
RaraP11416 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
RaraP11416 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
RaraP11416 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC25.58■■□□□ 1.69
RaraP11416 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC25.58■■□□□ 1.69
RaraP11416 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC25.58■■□□□ 1.69
RaraP11416 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC25.58■■□□□ 1.68
RaraP11416 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
RaraP11416 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC25.57■■□□□ 1.68
RaraP11416 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
RaraP11416 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
RaraP11416 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
RaraP11416 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
RaraP11416 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
RaraP11416 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
RaraP11416 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC25.54■■□□□ 1.68
RaraP11416 Gm45855-201ENSMUST00000212546 880 ntBASIC25.54■■□□□ 1.68
Retrieved 100 of 76,532 protein–RNA pairs in 10.7 ms