Protein–RNA interactions for Protein: P09022

Hoxa1, Homeobox protein Hox-A1, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxa1P09022 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Hoxa1P09022 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Hoxa1P09022 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Hoxa1P09022 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Hoxa1P09022 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Hoxa1P09022 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Hoxa1P09022 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Hoxa1P09022 Gm43863-201ENSMUST00000203822 1192 ntBASIC19.29■□□□□ 0.68
Hoxa1P09022 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Hoxa1P09022 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Hoxa1P09022 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Hoxa1P09022 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Hoxa1P09022 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Hoxa1P09022 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Hoxa1P09022 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Hoxa1P09022 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Hoxa1P09022 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.67
Hoxa1P09022 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
Hoxa1P09022 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Hoxa1P09022 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC19.26■□□□□ 0.67
Hoxa1P09022 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Hoxa1P09022 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
Hoxa1P09022 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC19.25■□□□□ 0.67
Hoxa1P09022 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Hoxa1P09022 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Hoxa1P09022 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
Hoxa1P09022 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hoxa1P09022 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hoxa1P09022 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hoxa1P09022 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hoxa1P09022 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
Hoxa1P09022 AC157572.2-201ENSMUST00000226970 908 ntBASIC19.23■□□□□ 0.67
Hoxa1P09022 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hoxa1P09022 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC19.22■□□□□ 0.67
Hoxa1P09022 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hoxa1P09022 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hoxa1P09022 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Hoxa1P09022 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Hoxa1P09022 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Hoxa1P09022 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC19.21■□□□□ 0.67
Hoxa1P09022 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC19.21■□□□□ 0.67
Hoxa1P09022 Gm9397-201ENSMUST00000200125 605 ntBASIC19.21■□□□□ 0.67
Hoxa1P09022 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Hoxa1P09022 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Hoxa1P09022 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Hoxa1P09022 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Hoxa1P09022 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Hoxa1P09022 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Hoxa1P09022 Tdp2-203ENSMUST00000223804 1136 ntBASIC19.2■□□□□ 0.66
Hoxa1P09022 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Hoxa1P09022 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hoxa1P09022 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC19.18■□□□□ 0.66
Hoxa1P09022 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC19.18■□□□□ 0.66
Hoxa1P09022 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC19.18■□□□□ 0.66
Hoxa1P09022 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Hoxa1P09022 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Hoxa1P09022 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Hoxa1P09022 Gm24970-201ENSMUST00000175582 82 ntBASIC19.17■□□□□ 0.66
Hoxa1P09022 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Hoxa1P09022 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Hoxa1P09022 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC19.16■□□□□ 0.66
Hoxa1P09022 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Hoxa1P09022 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
Hoxa1P09022 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Hoxa1P09022 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC19.16■□□□□ 0.66
Hoxa1P09022 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Hoxa1P09022 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Hoxa1P09022 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Hoxa1P09022 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC19.14■□□□□ 0.65
Hoxa1P09022 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
Hoxa1P09022 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Hoxa1P09022 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Hoxa1P09022 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Hoxa1P09022 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Hoxa1P09022 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Hoxa1P09022 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Hoxa1P09022 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Hoxa1P09022 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Hoxa1P09022 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Hoxa1P09022 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
Hoxa1P09022 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Hoxa1P09022 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC19.11■□□□□ 0.65
Hoxa1P09022 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Hoxa1P09022 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC19.1■□□□□ 0.65
Hoxa1P09022 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC19.1■□□□□ 0.65
Hoxa1P09022 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC19.1■□□□□ 0.65
Hoxa1P09022 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC19.09■□□□□ 0.65
Hoxa1P09022 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Hoxa1P09022 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
Hoxa1P09022 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Hoxa1P09022 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Hoxa1P09022 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Hoxa1P09022 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC19.08■□□□□ 0.65
Hoxa1P09022 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Hoxa1P09022 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Hoxa1P09022 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Hoxa1P09022 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Hoxa1P09022 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Hoxa1P09022 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
Hoxa1P09022 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 77.6 ms