Protein–RNA interactions for Protein: A0A075B624

Trav15d-1-dv6d-1, T cell receptor alpha variable 15D-1-DV6D-1 (Fragment), mousemouse

Predictions only

Length 124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav15d-1-dv6d-1A0A075B624 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
Trav15d-1-dv6d-1A0A075B624 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Trav15d-1-dv6d-1A0A075B624 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC20.25■□□□□ 0.83
Trav15d-1-dv6d-1A0A075B624 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trav15d-1-dv6d-1A0A075B624 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC20.25■□□□□ 0.83
Trav15d-1-dv6d-1A0A075B624 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Trav15d-1-dv6d-1A0A075B624 Gm24804-201ENSMUST00000174982 85 ntBASIC20.25■□□□□ 0.83
Trav15d-1-dv6d-1A0A075B624 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trav15d-1-dv6d-1A0A075B624 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trav15d-1-dv6d-1A0A075B624 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC20.24■□□□□ 0.83
Trav15d-1-dv6d-1A0A075B624 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trav15d-1-dv6d-1A0A075B624 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trav15d-1-dv6d-1A0A075B624 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Trav15d-1-dv6d-1A0A075B624 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Trav15d-1-dv6d-1A0A075B624 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trav15d-1-dv6d-1A0A075B624 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trav15d-1-dv6d-1A0A075B624 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC20.21■□□□□ 0.83
Trav15d-1-dv6d-1A0A075B624 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trav15d-1-dv6d-1A0A075B624 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trav15d-1-dv6d-1A0A075B624 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trav15d-1-dv6d-1A0A075B624 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Trav15d-1-dv6d-1A0A075B624 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trav15d-1-dv6d-1A0A075B624 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trav15d-1-dv6d-1A0A075B624 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Trav15d-1-dv6d-1A0A075B624 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Trav15d-1-dv6d-1A0A075B624 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC20.16■□□□□ 0.82
Trav15d-1-dv6d-1A0A075B624 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC20.16■□□□□ 0.82
Trav15d-1-dv6d-1A0A075B624 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Trav15d-1-dv6d-1A0A075B624 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Trav15d-1-dv6d-1A0A075B624 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trav15d-1-dv6d-1A0A075B624 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Trav15d-1-dv6d-1A0A075B624 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trav15d-1-dv6d-1A0A075B624 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trav15d-1-dv6d-1A0A075B624 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Trav15d-1-dv6d-1A0A075B624 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trav15d-1-dv6d-1A0A075B624 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
Trav15d-1-dv6d-1A0A075B624 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC20.11■□□□□ 0.81
Trav15d-1-dv6d-1A0A075B624 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trav15d-1-dv6d-1A0A075B624 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trav15d-1-dv6d-1A0A075B624 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Trav15d-1-dv6d-1A0A075B624 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC20.1■□□□□ 0.81
Trav15d-1-dv6d-1A0A075B624 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Trav15d-1-dv6d-1A0A075B624 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trav15d-1-dv6d-1A0A075B624 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Trav15d-1-dv6d-1A0A075B624 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Trav15d-1-dv6d-1A0A075B624 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Trav15d-1-dv6d-1A0A075B624 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Trav15d-1-dv6d-1A0A075B624 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Trav15d-1-dv6d-1A0A075B624 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Trav15d-1-dv6d-1A0A075B624 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Trav15d-1-dv6d-1A0A075B624 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Trav15d-1-dv6d-1A0A075B624 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
Trav15d-1-dv6d-1A0A075B624 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trav15d-1-dv6d-1A0A075B624 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trav15d-1-dv6d-1A0A075B624 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trav15d-1-dv6d-1A0A075B624 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Trav15d-1-dv6d-1A0A075B624 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trav15d-1-dv6d-1A0A075B624 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trav15d-1-dv6d-1A0A075B624 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trav15d-1-dv6d-1A0A075B624 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC20.05■□□□□ 0.8
Trav15d-1-dv6d-1A0A075B624 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trav15d-1-dv6d-1A0A075B624 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trav15d-1-dv6d-1A0A075B624 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trav15d-1-dv6d-1A0A075B624 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trav15d-1-dv6d-1A0A075B624 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trav15d-1-dv6d-1A0A075B624 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trav15d-1-dv6d-1A0A075B624 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trav15d-1-dv6d-1A0A075B624 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Trav15d-1-dv6d-1A0A075B624 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
Trav15d-1-dv6d-1A0A075B624 AC122428.3-201ENSMUST00000215551 2290 ntBASIC20.04■□□□□ 0.8
Trav15d-1-dv6d-1A0A075B624 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Trav15d-1-dv6d-1A0A075B624 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trav15d-1-dv6d-1A0A075B624 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trav15d-1-dv6d-1A0A075B624 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trav15d-1-dv6d-1A0A075B624 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trav15d-1-dv6d-1A0A075B624 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
Trav15d-1-dv6d-1A0A075B624 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trav15d-1-dv6d-1A0A075B624 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trav15d-1-dv6d-1A0A075B624 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trav15d-1-dv6d-1A0A075B624 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trav15d-1-dv6d-1A0A075B624 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trav15d-1-dv6d-1A0A075B624 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC20■□□□□ 0.79
Trav15d-1-dv6d-1A0A075B624 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
Trav15d-1-dv6d-1A0A075B624 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Trav15d-1-dv6d-1A0A075B624 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Trav15d-1-dv6d-1A0A075B624 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Trav15d-1-dv6d-1A0A075B624 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trav15d-1-dv6d-1A0A075B624 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trav15d-1-dv6d-1A0A075B624 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trav15d-1-dv6d-1A0A075B624 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trav15d-1-dv6d-1A0A075B624 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Trav15d-1-dv6d-1A0A075B624 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Trav15d-1-dv6d-1A0A075B624 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Trav15d-1-dv6d-1A0A075B624 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trav15d-1-dv6d-1A0A075B624 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trav15d-1-dv6d-1A0A075B624 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
Trav15d-1-dv6d-1A0A075B624 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trav15d-1-dv6d-1A0A075B624 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trav15d-1-dv6d-1A0A075B624 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trav15d-1-dv6d-1A0A075B624 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 16.5 ms