Protein–RNA interactions for Protein: A0A075B5Z4

Trav1, T cell receptor alpha variable 1 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav1A0A075B5Z4 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC22.39■■□□□ 1.18
Trav1A0A075B5Z4 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.18
Trav1A0A075B5Z4 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC22.39■■□□□ 1.17
Trav1A0A075B5Z4 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Trav1A0A075B5Z4 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
Trav1A0A075B5Z4 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC22.39■■□□□ 1.17
Trav1A0A075B5Z4 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Trav1A0A075B5Z4 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC22.38■■□□□ 1.17
Trav1A0A075B5Z4 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC22.38■■□□□ 1.17
Trav1A0A075B5Z4 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
Trav1A0A075B5Z4 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Trav1A0A075B5Z4 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC22.37■■□□□ 1.17
Trav1A0A075B5Z4 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
Trav1A0A075B5Z4 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Trav1A0A075B5Z4 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
Trav1A0A075B5Z4 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC22.36■■□□□ 1.17
Trav1A0A075B5Z4 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Trav1A0A075B5Z4 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
Trav1A0A075B5Z4 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
Trav1A0A075B5Z4 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
Trav1A0A075B5Z4 AC153890.1-201ENSMUST00000220021 2469 ntBASIC22.34■■□□□ 1.17
Trav1A0A075B5Z4 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Trav1A0A075B5Z4 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Trav1A0A075B5Z4 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
Trav1A0A075B5Z4 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC22.32■■□□□ 1.16
Trav1A0A075B5Z4 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Trav1A0A075B5Z4 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Trav1A0A075B5Z4 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
Trav1A0A075B5Z4 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
Trav1A0A075B5Z4 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC22.32■■□□□ 1.16
Trav1A0A075B5Z4 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Trav1A0A075B5Z4 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
Trav1A0A075B5Z4 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Trav1A0A075B5Z4 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Trav1A0A075B5Z4 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
Trav1A0A075B5Z4 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
Trav1A0A075B5Z4 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC22.3■■□□□ 1.16
Trav1A0A075B5Z4 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
Trav1A0A075B5Z4 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Trav1A0A075B5Z4 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
Trav1A0A075B5Z4 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
Trav1A0A075B5Z4 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Trav1A0A075B5Z4 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC22.27■■□□□ 1.16
Trav1A0A075B5Z4 Gm45855-201ENSMUST00000212546 880 ntBASIC22.27■■□□□ 1.16
Trav1A0A075B5Z4 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Trav1A0A075B5Z4 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC22.26■■□□□ 1.15
Trav1A0A075B5Z4 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
Trav1A0A075B5Z4 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
Trav1A0A075B5Z4 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC22.26■■□□□ 1.15
Trav1A0A075B5Z4 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Trav1A0A075B5Z4 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC22.25■■□□□ 1.15
Trav1A0A075B5Z4 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC22.25■■□□□ 1.15
Trav1A0A075B5Z4 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Trav1A0A075B5Z4 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Trav1A0A075B5Z4 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trav1A0A075B5Z4 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trav1A0A075B5Z4 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trav1A0A075B5Z4 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trav1A0A075B5Z4 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Trav1A0A075B5Z4 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Trav1A0A075B5Z4 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
Trav1A0A075B5Z4 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Trav1A0A075B5Z4 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC22.19■■□□□ 1.14
Trav1A0A075B5Z4 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC22.18■■□□□ 1.14
Trav1A0A075B5Z4 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
Trav1A0A075B5Z4 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Trav1A0A075B5Z4 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC22.17■■□□□ 1.14
Trav1A0A075B5Z4 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Trav1A0A075B5Z4 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Trav1A0A075B5Z4 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
Trav1A0A075B5Z4 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC22.15■■□□□ 1.14
Trav1A0A075B5Z4 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Trav1A0A075B5Z4 AC122428.3-201ENSMUST00000215551 2290 ntBASIC22.15■■□□□ 1.14
Trav1A0A075B5Z4 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
Trav1A0A075B5Z4 Gm30023-201ENSMUST00000197970 889 ntBASIC22.14■■□□□ 1.13
Trav1A0A075B5Z4 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Trav1A0A075B5Z4 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Trav1A0A075B5Z4 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC22.13■■□□□ 1.13
Trav1A0A075B5Z4 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Trav1A0A075B5Z4 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC22.13■■□□□ 1.13
Trav1A0A075B5Z4 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Trav1A0A075B5Z4 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Trav1A0A075B5Z4 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
Trav1A0A075B5Z4 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Trav1A0A075B5Z4 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
Trav1A0A075B5Z4 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Trav1A0A075B5Z4 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
Trav1A0A075B5Z4 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC22.1■■□□□ 1.13
Trav1A0A075B5Z4 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Trav1A0A075B5Z4 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Trav1A0A075B5Z4 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC22.09■■□□□ 1.13
Trav1A0A075B5Z4 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.13
Trav1A0A075B5Z4 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Trav1A0A075B5Z4 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC22.08■■□□□ 1.13
Trav1A0A075B5Z4 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC22.08■■□□□ 1.13
Trav1A0A075B5Z4 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.13
Trav1A0A075B5Z4 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.13
Trav1A0A075B5Z4 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Trav1A0A075B5Z4 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
Trav1A0A075B5Z4 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
Retrieved 100 of 76,532 protein–RNA pairs in 7.7 ms