Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
CDX1P47902 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CDX1P47902 AC079178.2-201ENST00000439323 1624 ntBASIC5.92□□□□□ -1.46
CDX1P47902 CTNNA1-244ENST00000627109 3831 ntTSL 5 BASIC5.92□□□□□ -1.46
CDX1P47902 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC5.92□□□□□ -1.46
CDX1P47902 RBMY1A3P-201ENST00000382670 1404 ntBASIC5.92□□□□□ -1.46
CDX1P47902 C12orf77-202ENST00000549262 1443 ntTSL 4 BASIC5.92□□□□□ -1.46
CDX1P47902 RIPOR2-207ENST00000540914 3614 ntTSL 2 BASIC5.92□□□□□ -1.46
CDX1P47902 TGFB2-202ENST00000366930 4969 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CDX1P47902 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC5.92□□□□□ -1.46
CDX1P47902 HIPK1-211ENST00000626993 8016 ntTSL 5 BASIC5.92□□□□□ -1.46
CDX1P47902 AGXT2-201ENST00000231420 2364 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CDX1P47902 AC009812.3-201ENST00000523871 3766 ntTSL 4 BASIC5.92□□□□□ -1.46
CDX1P47902 AC007159.1-201ENST00000566529 4706 ntBASIC5.92□□□□□ -1.46
CDX1P47902 AC007114.2-201ENST00000576014 4281 ntBASIC5.92□□□□□ -1.46
CDX1P47902 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
CDX1P47902 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CDX1P47902 OR2L2-201ENST00000366479 1134 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
CDX1P47902 SP140-202ENST00000373645 814 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CDX1P47902 AL451142.1-201ENST00000375867 775 ntBASIC5.92□□□□□ -1.46
CDX1P47902 CFAP61-203ENST00000377293 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
CDX1P47902 MIR555-201ENST00000384987 96 ntBASIC5.92□□□□□ -1.46
CDX1P47902 RN7SKP207-201ENST00000411204 303 ntBASIC5.92□□□□□ -1.46
CDX1P47902 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC5.92□□□□□ -1.46
CDX1P47902 AC092042.2-201ENST00000417304 331 ntBASIC5.92□□□□□ -1.46
CDX1P47902 LINC01392-201ENST00000419883 565 ntTSL 5 BASIC5.92□□□□□ -1.46
CDX1P47902 EEF1A1P34-201ENST00000419888 1267 ntBASIC5.92□□□□□ -1.46
CDX1P47902 SNRK-AS1-201ENST00000422681 750 ntTSL 3 BASIC5.92□□□□□ -1.46
CDX1P47902 RPL35P8-201ENST00000433284 337 ntBASIC5.92□□□□□ -1.46
CDX1P47902 SNX18P9-201ENST00000440580 835 ntBASIC5.92□□□□□ -1.46
CDX1P47902 AL161646.1-201ENST00000447860 1013 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CDX1P47902 AC092687.2-201ENST00000452909 568 ntTSL 5 BASIC5.92□□□□□ -1.46
CDX1P47902 AL357143.1-201ENST00000457239 934 ntTSL 5 BASIC5.92□□□□□ -1.46
CDX1P47902 RN7SL308P-201ENST00000464971 297 ntBASIC5.92□□□□□ -1.46
CDX1P47902 RN7SL233P-201ENST00000469988 277 ntBASIC5.92□□□□□ -1.46
CDX1P47902 AC128716.1-201ENST00000475129 166 ntBASIC5.92□□□□□ -1.46
CDX1P47902 AC079944.1-201ENST00000485426 495 ntBASIC5.92□□□□□ -1.46
CDX1P47902 AC055733.3-201ENST00000505214 523 ntBASIC5.92□□□□□ -1.46
CDX1P47902 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC5.92□□□□□ -1.46
CDX1P47902 AC106774.2-201ENST00000510266 406 ntBASIC5.92□□□□□ -1.46
CDX1P47902 AC095059.2-201ENST00000510601 933 ntBASIC5.92□□□□□ -1.46
CDX1P47902 AC083843.1-201ENST00000521444 849 ntTSL 4 BASIC5.92□□□□□ -1.46
CDX1P47902 AP003080.1-202ENST00000526526 915 ntBASIC5.92□□□□□ -1.46
CDX1P47902 MALAT1-203ENST00000544868 480 ntTSL 3 BASIC5.92□□□□□ -1.46
CDX1P47902 COPZ1-205ENST00000548753 778 ntTSL 3 BASIC5.92□□□□□ -1.46
CDX1P47902 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC5.92□□□□□ -1.46
CDX1P47902 COPZ1-218ENST00000553231 551 ntTSL 5 BASIC5.92□□□□□ -1.46
CDX1P47902 COX6CP11-201ENST00000555293 229 ntBASIC5.92□□□□□ -1.46
CDX1P47902 TIMM9-205ENST00000555404 430 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CDX1P47902 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC5.92□□□□□ -1.46
CDX1P47902 AC092868.2-201ENST00000558749 497 ntTSL 3 BASIC5.92□□□□□ -1.46
CDX1P47902 INO80-AS1-202ENST00000560178 444 ntTSL 3 BASIC5.92□□□□□ -1.46
CDX1P47902 AC021755.3-201ENST00000560376 864 ntTSL 5 BASIC5.92□□□□□ -1.46
CDX1P47902 AL137802.2-201ENST00000562878 1110 ntBASIC5.92□□□□□ -1.46
CDX1P47902 AC243312.1-201ENST00000570582 275 ntBASIC5.92□□□□□ -1.46
CDX1P47902 AC005736.2-201ENST00000571302 774 ntTSL 2 BASIC5.92□□□□□ -1.46
CDX1P47902 MIR4786-201ENST00000583954 80 ntBASIC5.92□□□□□ -1.46
CDX1P47902 AC107993.1-201ENST00000591343 684 ntBASIC5.92□□□□□ -1.46
CDX1P47902 AC005518.2-201ENST00000603254 282 ntBASIC5.92□□□□□ -1.46
CDX1P47902 AL035587.1-202ENST00000607218 984 ntTSL 3 BASIC5.92□□□□□ -1.46
CDX1P47902 FAM27E3-202ENST00000614611 340 ntBASIC5.92□□□□□ -1.46
CDX1P47902 BX005195.1-201ENST00000618097 1198 ntBASIC5.92□□□□□ -1.46
CDX1P47902 MALAT1-217ENST00000620902 352 ntTSL 3 BASIC5.92□□□□□ -1.46
CDX1P47902 AP000842.4-201ENST00000638781 748 ntBASIC5.92□□□□□ -1.46
CDX1P47902 BCAS3-234ENST00000639611 108 ntTSL 5 BASIC5.92□□□□□ -1.46
CDX1P47902 AC119674.1-209ENST00000642031 997 ntBASIC5.92□□□□□ -1.46
CDX1P47902 AC100810.3-201ENST00000633189 2240 ntBASIC5.92□□□□□ -1.46
CDX1P47902 TROVE2-201ENST00000367441 1791 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
CDX1P47902 SLC39A12-202ENST00000377371 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CDX1P47902 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC5.92□□□□□ -1.46
CDX1P47902 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
CDX1P47902 PSMC1P7-201ENST00000495689 1315 ntBASIC5.92□□□□□ -1.46
CDX1P47902 AMZ2-210ENST00000580753 1339 ntAPPRIS P1 TSL 5 BASIC5.92□□□□□ -1.46
CDX1P47902 AC091806.1-201ENST00000452690 3000 ntTSL 2 BASIC5.92□□□□□ -1.46
CDX1P47902 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CDX1P47902 HSPA8P11-201ENST00000508840 1898 ntBASIC5.92□□□□□ -1.46
CDX1P47902 AL359694.2-201ENST00000567753 1615 ntBASIC5.92□□□□□ -1.46
CDX1P47902 ZNF710-AS1-202ENST00000620791 2133 ntBASIC5.92□□□□□ -1.46
CDX1P47902 FKBP5-202ENST00000536438 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CDX1P47902 AC121758.1-201ENST00000557452 3942 ntTSL 2 BASIC5.92□□□□□ -1.46
CDX1P47902 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CDX1P47902 AL023495.1-201ENST00000413005 1923 ntTSL 2 BASIC5.91□□□□□ -1.46
CDX1P47902 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC5.91□□□□□ -1.46
CDX1P47902 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CDX1P47902 USP16-204ENST00000399976 2963 ntAPPRIS P3 TSL 1 (best) BASIC5.91□□□□□ -1.46
CDX1P47902 AC007388.1-201ENST00000426083 1438 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CDX1P47902 LRRC37B-203ENST00000394713 3025 ntAPPRIS P3 TSL 1 (best) BASIC5.91□□□□□ -1.46
CDX1P47902 TEX14-203ENST00000389934 4927 ntAPPRIS P4 TSL 1 (best) BASIC5.91□□□□□ -1.46
CDX1P47902 RAI14-208ENST00000506376 3091 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CDX1P47902 ZNF507-203ENST00000544431 5764 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CDX1P47902 ZNF300-204ENST00000427179 4155 ntTSL 2 BASIC5.91□□□□□ -1.46
CDX1P47902 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CDX1P47902 MAPK10-261ENST00000641050 3109 ntBASIC5.91□□□□□ -1.46
CDX1P47902 LINC01697-202ENST00000426534 1764 ntTSL 2 BASIC5.91□□□□□ -1.46
CDX1P47902 MPP7-201ENST00000337532 5080 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
CDX1P47902 KIAA0391-203ENST00000534898 2611 ntAPPRIS P3 TSL 1 (best) BASIC5.91□□□□□ -1.46
CDX1P47902 API5P1-201ENST00000424316 1510 ntBASIC5.91□□□□□ -1.46
CDX1P47902 MAPRE2-203ENST00000436190 4323 ntTSL 2 BASIC5.91□□□□□ -1.46
CDX1P47902 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC5.91□□□□□ -1.46
CDX1P47902 ZNF438-201ENST00000331737 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 128.5 ms