Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHA3Q9Y5H8 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
PCDHA3Q9Y5H8 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
PCDHA3Q9Y5H8 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHA3Q9Y5H8 AC005332.7-201ENST00000614046 2005 ntBASIC20.87■□□□□ 0.93
PCDHA3Q9Y5H8 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHA3Q9Y5H8 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHA3Q9Y5H8 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
PCDHA3Q9Y5H8 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHA3Q9Y5H8 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHA3Q9Y5H8 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHA3Q9Y5H8 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHA3Q9Y5H8 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHA3Q9Y5H8 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
PCDHA3Q9Y5H8 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC20.86■□□□□ 0.93
PCDHA3Q9Y5H8 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC20.86■□□□□ 0.93
PCDHA3Q9Y5H8 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.86■□□□□ 0.93
PCDHA3Q9Y5H8 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC20.86■□□□□ 0.93
PCDHA3Q9Y5H8 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC20.86■□□□□ 0.93
PCDHA3Q9Y5H8 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHA3Q9Y5H8 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHA3Q9Y5H8 BX323043.1-201ENST00000641006 1765 ntBASIC20.86■□□□□ 0.93
PCDHA3Q9Y5H8 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHA3Q9Y5H8 AC093484.2-201ENST00000580996 2166 ntBASIC20.86■□□□□ 0.93
PCDHA3Q9Y5H8 AC018445.3-201ENST00000624177 1945 ntBASIC20.86■□□□□ 0.93
PCDHA3Q9Y5H8 AC098818.2-201ENST00000564925 2320 ntBASIC20.86■□□□□ 0.93
PCDHA3Q9Y5H8 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHA3Q9Y5H8 PWWP2AP1-201ENST00000429776 2273 ntBASIC20.85■□□□□ 0.93
PCDHA3Q9Y5H8 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.85■□□□□ 0.93
PCDHA3Q9Y5H8 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHA3Q9Y5H8 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHA3Q9Y5H8 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
PCDHA3Q9Y5H8 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
PCDHA3Q9Y5H8 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHA3Q9Y5H8 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHA3Q9Y5H8 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHA3Q9Y5H8 AC006015.1-201ENST00000429970 570 ntBASIC20.85■□□□□ 0.93
PCDHA3Q9Y5H8 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.85■□□□□ 0.93
PCDHA3Q9Y5H8 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHA3Q9Y5H8 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC20.85■□□□□ 0.93
PCDHA3Q9Y5H8 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHA3Q9Y5H8 AL020996.1-203ENST00000536896 2307 ntBASIC20.85■□□□□ 0.93
PCDHA3Q9Y5H8 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHA3Q9Y5H8 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHA3Q9Y5H8 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHA3Q9Y5H8 KRT8P20-201ENST00000423953 1409 ntBASIC20.85■□□□□ 0.93
PCDHA3Q9Y5H8 KRT16P6-202ENST00000425692 1426 ntBASIC20.85■□□□□ 0.93
PCDHA3Q9Y5H8 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHA3Q9Y5H8 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHA3Q9Y5H8 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC20.84■□□□□ 0.93
PCDHA3Q9Y5H8 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
PCDHA3Q9Y5H8 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
PCDHA3Q9Y5H8 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
PCDHA3Q9Y5H8 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHA3Q9Y5H8 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHA3Q9Y5H8 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHA3Q9Y5H8 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
PCDHA3Q9Y5H8 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHA3Q9Y5H8 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHA3Q9Y5H8 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHA3Q9Y5H8 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC20.84■□□□□ 0.93
PCDHA3Q9Y5H8 AC016769.1-201ENST00000409132 1010 ntBASIC20.84■□□□□ 0.93
PCDHA3Q9Y5H8 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.84■□□□□ 0.93
PCDHA3Q9Y5H8 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.84■□□□□ 0.93
PCDHA3Q9Y5H8 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC20.84■□□□□ 0.93
PCDHA3Q9Y5H8 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC20.84■□□□□ 0.93
PCDHA3Q9Y5H8 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
PCDHA3Q9Y5H8 AC011767.1-201ENST00000617410 1153 ntBASIC20.84■□□□□ 0.93
PCDHA3Q9Y5H8 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHA3Q9Y5H8 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC20.84■□□□□ 0.93
PCDHA3Q9Y5H8 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHA3Q9Y5H8 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC20.84■□□□□ 0.93
PCDHA3Q9Y5H8 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
PCDHA3Q9Y5H8 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHA3Q9Y5H8 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHA3Q9Y5H8 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHA3Q9Y5H8 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.83■□□□□ 0.93
PCDHA3Q9Y5H8 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC20.83■□□□□ 0.93
PCDHA3Q9Y5H8 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
PCDHA3Q9Y5H8 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHA3Q9Y5H8 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC20.83■□□□□ 0.93
PCDHA3Q9Y5H8 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHA3Q9Y5H8 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC20.83■□□□□ 0.92
PCDHA3Q9Y5H8 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
PCDHA3Q9Y5H8 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
PCDHA3Q9Y5H8 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
PCDHA3Q9Y5H8 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHA3Q9Y5H8 STK25-204ENST00000405585 1643 ntTSL 2 BASIC20.82■□□□□ 0.92
PCDHA3Q9Y5H8 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHA3Q9Y5H8 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
PCDHA3Q9Y5H8 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHA3Q9Y5H8 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHA3Q9Y5H8 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHA3Q9Y5H8 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
PCDHA3Q9Y5H8 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHA3Q9Y5H8 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
PCDHA3Q9Y5H8 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC20.82■□□□□ 0.92
PCDHA3Q9Y5H8 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC20.82■□□□□ 0.92
PCDHA3Q9Y5H8 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC20.82■□□□□ 0.92
PCDHA3Q9Y5H8 CYP2T3P-201ENST00000601990 817 ntBASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms