Protein–RNA interactions for Protein: Q9NUD5

ZCCHC3, Zinc finger CCHC domain-containing protein 3, humanhuman

Known RBP Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZCCHC3Q9NUD5 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ZCCHC3Q9NUD5 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
ZCCHC3Q9NUD5 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.77■□□□□ 0.6
ZCCHC3Q9NUD5 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
ZCCHC3Q9NUD5 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC18.77■□□□□ 0.6
ZCCHC3Q9NUD5 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC18.77■□□□□ 0.6
ZCCHC3Q9NUD5 CD37-204ENST00000535669 1674 ntTSL 2 BASIC18.77■□□□□ 0.6
ZCCHC3Q9NUD5 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
ZCCHC3Q9NUD5 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ZCCHC3Q9NUD5 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC18.77■□□□□ 0.6
ZCCHC3Q9NUD5 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.77■□□□□ 0.6
ZCCHC3Q9NUD5 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.77■□□□□ 0.6
ZCCHC3Q9NUD5 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ZCCHC3Q9NUD5 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
ZCCHC3Q9NUD5 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ZCCHC3Q9NUD5 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC18.77■□□□□ 0.59
ZCCHC3Q9NUD5 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
ZCCHC3Q9NUD5 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
ZCCHC3Q9NUD5 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.76■□□□□ 0.59
ZCCHC3Q9NUD5 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
ZCCHC3Q9NUD5 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ZCCHC3Q9NUD5 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
ZCCHC3Q9NUD5 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ZCCHC3Q9NUD5 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.76■□□□□ 0.59
ZCCHC3Q9NUD5 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ZCCHC3Q9NUD5 CDCA4P2-201ENST00000441182 718 ntBASIC18.76■□□□□ 0.59
ZCCHC3Q9NUD5 ISCU-212ENST00000547005 795 ntTSL 3 BASIC18.76■□□□□ 0.59
ZCCHC3Q9NUD5 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC18.76■□□□□ 0.59
ZCCHC3Q9NUD5 AC133552.2-202ENST00000575694 574 ntBASIC18.76■□□□□ 0.59
ZCCHC3Q9NUD5 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
ZCCHC3Q9NUD5 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ZCCHC3Q9NUD5 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
ZCCHC3Q9NUD5 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ZCCHC3Q9NUD5 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
ZCCHC3Q9NUD5 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.76■□□□□ 0.59
ZCCHC3Q9NUD5 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ZCCHC3Q9NUD5 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ZCCHC3Q9NUD5 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.75■□□□□ 0.59
ZCCHC3Q9NUD5 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ZCCHC3Q9NUD5 KRT17P1-201ENST00000399211 1546 ntBASIC18.75■□□□□ 0.59
ZCCHC3Q9NUD5 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
ZCCHC3Q9NUD5 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
ZCCHC3Q9NUD5 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
ZCCHC3Q9NUD5 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ZCCHC3Q9NUD5 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
ZCCHC3Q9NUD5 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ZCCHC3Q9NUD5 AC026185.1-201ENST00000445748 174 ntBASIC18.75■□□□□ 0.59
ZCCHC3Q9NUD5 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC18.75■□□□□ 0.59
ZCCHC3Q9NUD5 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC18.75■□□□□ 0.59
ZCCHC3Q9NUD5 VPS53-216ENST00000574029 585 ntTSL 4 BASIC18.75■□□□□ 0.59
ZCCHC3Q9NUD5 BRWD1-AS2-201ENST00000603064 1028 ntBASIC18.75■□□□□ 0.59
ZCCHC3Q9NUD5 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
ZCCHC3Q9NUD5 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
ZCCHC3Q9NUD5 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.75■□□□□ 0.59
ZCCHC3Q9NUD5 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
ZCCHC3Q9NUD5 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ZCCHC3Q9NUD5 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.75■□□□□ 0.59
ZCCHC3Q9NUD5 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC18.75■□□□□ 0.59
ZCCHC3Q9NUD5 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ZCCHC3Q9NUD5 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.75■□□□□ 0.59
ZCCHC3Q9NUD5 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
ZCCHC3Q9NUD5 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.75■□□□□ 0.59
ZCCHC3Q9NUD5 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ZCCHC3Q9NUD5 KRT8P17-201ENST00000453110 1448 ntBASIC18.74■□□□□ 0.59
ZCCHC3Q9NUD5 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ZCCHC3Q9NUD5 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ZCCHC3Q9NUD5 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
ZCCHC3Q9NUD5 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
ZCCHC3Q9NUD5 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ZCCHC3Q9NUD5 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.74■□□□□ 0.59
ZCCHC3Q9NUD5 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
ZCCHC3Q9NUD5 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC18.74■□□□□ 0.59
ZCCHC3Q9NUD5 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ZCCHC3Q9NUD5 MIR663A-201ENST00000385250 93 ntBASIC18.74■□□□□ 0.59
ZCCHC3Q9NUD5 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ZCCHC3Q9NUD5 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.74■□□□□ 0.59
ZCCHC3Q9NUD5 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.74■□□□□ 0.59
ZCCHC3Q9NUD5 DLX3-202ENST00000512495 834 ntTSL 2 BASIC18.74■□□□□ 0.59
ZCCHC3Q9NUD5 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC18.74■□□□□ 0.59
ZCCHC3Q9NUD5 AL031963.3-201ENST00000606441 850 ntBASIC18.74■□□□□ 0.59
ZCCHC3Q9NUD5 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC18.74■□□□□ 0.59
ZCCHC3Q9NUD5 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ZCCHC3Q9NUD5 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
ZCCHC3Q9NUD5 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
ZCCHC3Q9NUD5 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ZCCHC3Q9NUD5 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
ZCCHC3Q9NUD5 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ZCCHC3Q9NUD5 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ZCCHC3Q9NUD5 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.74■□□□□ 0.59
ZCCHC3Q9NUD5 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.74■□□□□ 0.59
ZCCHC3Q9NUD5 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
ZCCHC3Q9NUD5 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ZCCHC3Q9NUD5 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ZCCHC3Q9NUD5 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ZCCHC3Q9NUD5 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ZCCHC3Q9NUD5 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.73■□□□□ 0.59
ZCCHC3Q9NUD5 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
ZCCHC3Q9NUD5 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
ZCCHC3Q9NUD5 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
ZCCHC3Q9NUD5 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms