Protein–RNA interactions for Protein: Q06406

LSM6, U6 snRNA-associated Sm-like protein LSm6, yeast

Known RBP Predictions only

Length 86 aa.

Protein		RNA				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	UniProt Accession	Gene	Ensembl Transcript ID	Length	Transcript Status	Prediction Score	Prediction z-Score	Detected Interaction
LSM6	Q06406	YER053C-A	YER053C-A	114 nt		-1.34	□□□□□ -2.62
LSM6	Q06406	YBR223W-A	YBR223W-A	120 nt		-1.34	□□□□□ -2.62
LSM6	Q06406	snR49	snR49	165 nt		-1.36	□□□□□ -2.63
LSM6	Q06406	YMR193C-A	YMR193C-A	387 nt		-1.37	□□□□□ -2.63
LSM6	Q06406	VPS20	YMR077C	666 nt		-1.38	□□□□□ -2.63
LSM6	Q06406	RPS27B	YHR021C	249 nt		-1.4	□□□□□ -2.63
LSM6	Q06406	APQ12	YIL040W	417 nt		-1.4	□□□□□ -2.63
LSM6	Q06406	YLR154W-F	YLR154W-F	141 nt		-1.4	□□□□□ -2.63
LSM6	Q06406	YGL052W	YGL052W	306 nt		-1.42	□□□□□ -2.64
LSM6	Q06406	YDR544C	YDR544C	429 nt		-1.43	□□□□□ -2.64
LSM6	Q06406	YGL182C	YGL182C	324 nt		-1.43	□□□□□ -2.64
LSM6	Q06406	CSE2	YNR010W	450 nt		-1.43	□□□□□ -2.64
LSM6	Q06406	YGR069W	YGR069W	336 nt		-1.44	□□□□□ -2.64
LSM6	Q06406	YPR010C-A	YPR010C-A	219 nt		-1.44	□□□□□ -2.64
LSM6	Q06406	CSN9	YDR179C	489 nt		-1.46	□□□□□ -2.64
LSM6	Q06406	YLL019W-A	YLL019W-A	93 nt		-1.46	□□□□□ -2.64
LSM6	Q06406	YOR170W	YOR170W	306 nt		-1.46	□□□□□ -2.64
LSM6	Q06406	YCR038W-A	YCR038W-A	126 nt		-1.47	□□□□□ -2.64
LSM6	Q06406	MPC1	YGL080W	393 nt		-1.47	□□□□□ -2.64
LSM6	Q06406	tP(UGG)Q	tP(UGG)Q	72 nt		-1.47	□□□□□ -2.64
LSM6	Q06406	YJL047C-A	YJL047C-A	135 nt		-1.48	□□□□□ -2.65
LSM6	Q06406	EAF6	YJR082C	342 nt		-1.48	□□□□□ -2.65
LSM6	Q06406	TOM22	YNL131W	459 nt		-1.48	□□□□□ -2.65
LSM6	Q06406	YJL197C-A	YJL197C-A	282 nt		-1.49	□□□□□ -2.65
LSM6	Q06406	snR54	snR54	86 nt		-1.5	□□□□□ -2.65
LSM6	Q06406	YIL115W-A	YIL115W-A	372 nt		-1.51	□□□□□ -2.65
LSM6	Q06406	YJL077W-A	YJL077W-A	87 nt		-1.54	□□□□□ -2.66
LSM6	Q06406	TAH1	YCR060W	336 nt		-1.56	□□□□□ -2.66
LSM6	Q06406	tQ(UUG)Q	tQ(UUG)Q	76 nt		-1.56	□□□□□ -2.66
LSM6	Q06406	YAF9	YNL107W	681 nt		-1.56	□□□□□ -2.66
LSM6	Q06406	BI2	Q0110	1272 nt		-1.57	□□□□□ -2.66
LSM6	Q06406	Q0255	Q0255	1419 nt		-1.58	□□□□□ -2.66
LSM6	Q06406	HMRA1	YCR097W	381 nt		-1.6	□□□□□ -2.67
LSM6	Q06406	YLR285C-A	YLR285C-A	171 nt		-1.6	□□□□□ -2.67
LSM6	Q06406	YER006C-A	YER006C-A	318 nt		-1.61	□□□□□ -2.67
LSM6	Q06406	YOR015W	YOR015W	360 nt		-1.61	□□□□□ -2.67
LSM6	Q06406	snR74	snR74	88 nt		-1.63	□□□□□ -2.67
LSM6	Q06406	YIL032C	YIL032C	357 nt		-1.63	□□□□□ -2.67
LSM6	Q06406	YML099W-A	YML099W-A	330 nt		-1.63	□□□□□ -2.67
LSM6	Q06406	YPR016W-A	YPR016W-A	261 nt		-1.65	□□□□□ -2.67
LSM6	Q06406	JLP2	YMR132C	627 nt		-1.66	□□□□□ -2.68
LSM6	Q06406	YOR072W-B	YOR072W-B	162 nt		-1.66	□□□□□ -2.68
LSM6	Q06406	YER137W-A	YER137W-A	306 nt		-1.67	□□□□□ -2.68
LSM6	Q06406	YOR314W-A	YOR314W-A	111 nt		-1.67	□□□□□ -2.68
LSM6	Q06406	YGL149W	YGL149W	306 nt		-1.69	□□□□□ -2.68
LSM6	Q06406	YER090C-A	YER090C-A	90 nt		-1.71	□□□□□ -2.68
LSM6	Q06406	YKL123W	YKL123W	381 nt		-1.71	□□□□□ -2.68
LSM6	Q06406	YNL266W	YNL266W	420 nt		-1.71	□□□□□ -2.68
LSM6	Q06406	YDR048C	YDR048C	315 nt		-1.72	□□□□□ -2.68
LSM6	Q06406	snR189	snR189	189 nt		-1.72	□□□□□ -2.68
LSM6	Q06406	snR41	snR41	95 nt		-1.72	□□□□□ -2.68
LSM6	Q06406	snR50	snR50	90 nt		-1.73	□□□□□ -2.69
LSM6	Q06406	snR69	snR69	101 nt		-1.74	□□□□□ -2.69
LSM6	Q06406	YBL039C-A	YBL039C-A	84 nt		-1.74	□□□□□ -2.69
LSM6	Q06406	SKI7	YOR076C	2244 nt		-1.75	□□□□□ -2.69
LSM6	Q06406	STE18	YJR086W	333 nt		-1.75	□□□□□ -2.69
LSM6	Q06406	YLR434C	YLR434C	384 nt		-1.75	□□□□□ -2.69
LSM6	Q06406	YDL158C	YDL158C	309 nt		-1.77	□□□□□ -2.69
LSM6	Q06406	snR60	snR60	104 nt		-1.78	□□□□□ -2.69
LSM6	Q06406	YOR121C	YOR121C	306 nt		-1.78	□□□□□ -2.69
LSM6	Q06406	YNL122C	YNL122C	348 nt		-1.79	□□□□□ -2.7
LSM6	Q06406	YBR285W	YBR285W	435 nt		-1.8	□□□□□ -2.7
LSM6	Q06406	YDR102C	YDR102C	333 nt		-1.82	□□□□□ -2.7
LSM6	Q06406	tY(GUA)Q	tY(GUA)Q	84 nt		-1.82	□□□□□ -2.7
LSM6	Q06406	RDS3	YPR094W	324 nt		-1.85	□□□□□ -2.71
LSM6	Q06406	tW(UCA)Q	tW(UCA)Q	74 nt		-1.88	□□□□□ -2.71
LSM6	Q06406	snR67	snR67	82 nt		-1.91	□□□□□ -2.72
LSM6	Q06406	YNR077C	YNR077C	255 nt		-1.92	□□□□□ -2.72
LSM6	Q06406	YLR406C-A	YLR406C-A	150 nt		-1.93	□□□□□ -2.72
LSM6	Q06406	YMR001C-A	YMR001C-A	231 nt		-1.94	□□□□□ -2.72
LSM6	Q06406	YER097W	YER097W	330 nt		-1.96	□□□□□ -2.72
LSM6	Q06406	YFL032W	YFL032W	321 nt		-1.96	□□□□□ -2.72
LSM6	Q06406	CDC65	tQ(CUG)M	72 nt		-1.96	□□□□□ -2.72
LSM6	Q06406	YNL028W	YNL028W	318 nt		-1.96	□□□□□ -2.72
LSM6	Q06406	YNL324W	YNL324W	396 nt		-1.96	□□□□□ -2.72
LSM6	Q06406	PMP2	YEL017C-A	132 nt		-1.98	□□□□□ -2.73
LSM6	Q06406	YGR240C-A	YGR240C-A	201 nt		-2.02	□□□□□ -2.73
LSM6	Q06406	YML054C-A	YML054C-A	159 nt		-2.02	□□□□□ -2.73
LSM6	Q06406	tM(CAU)Q2	tM(CAU)Q2	78 nt		-2.03	□□□□□ -2.73
LSM6	Q06406	YNL205C	YNL205C	423 nt		-2.03	□□□□□ -2.73
LSM6	Q06406	ATP6	Q0085	780 nt		-2.04	□□□□□ -2.74
LSM6	Q06406	BIL1	YOR304C-A	231 nt		-2.04	□□□□□ -2.74
LSM6	Q06406	YOR008C-A	YOR008C-A	225 nt		-2.05	□□□□□ -2.74
LSM6	Q06406	YLR120W-A	YLR120W-A	102 nt		-2.06	□□□□□ -2.74
LSM6	Q06406	snR77	snR77	88 nt		-2.07	□□□□□ -2.74
LSM6	Q06406	HTL1	YCR020W-B	237 nt		-2.08	□□□□□ -2.74
LSM6	Q06406	YGR146C-A	YGR146C-A	162 nt		-2.08	□□□□□ -2.74
LSM6	Q06406	YLR202C	YLR202C	327 nt		-2.08	□□□□□ -2.74
LSM6	Q06406	YOL013W-B	YOL013W-B	291 nt		-2.09	□□□□□ -2.74
LSM6	Q06406	snR39B	snR39B	96 nt		-2.09	□□□□□ -2.74
LSM6	Q06406	YFL019C	YFL019C	354 nt		-2.1	□□□□□ -2.75
LSM6	Q06406	YNR025C	YNR025C	360 nt		-2.1	□□□□□ -2.75
LSM6	Q06406	snR81	snR81	201 nt		-2.11	□□□□□ -2.75
LSM6	Q06406	YGL041C	YGL041C	204 nt		-2.12	□□□□□ -2.75
LSM6	Q06406	YLR286W-A	YLR286W-A	135 nt		-2.12	□□□□□ -2.75
LSM6	Q06406	tD(GUC)Q	tD(GUC)Q	75 nt		-2.13	□□□□□ -2.75
LSM6	Q06406	YOR381W-A	YOR381W-A	168 nt		-2.14	□□□□□ -2.75
LSM6	Q06406	YMR315W-A	YMR315W-A	108 nt		-2.15	□□□□□ -2.75
LSM6	Q06406	YKL063C	YKL063C	504 nt		-2.16	□□□□□ -2.76
LSM6	Q06406	YBR178W	YBR178W	375 nt		-2.21	□□□□□ -2.76

Retrieved 100 of 7,029 protein–RNA pairs in 85.4 ms