Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
RNF4P78317 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
RNF4P78317 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RNF4P78317 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC18.5■□□□□ 0.55
RNF4P78317 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
RNF4P78317 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC18.5■□□□□ 0.55
RNF4P78317 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
RNF4P78317 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC18.5■□□□□ 0.55
RNF4P78317 PRORSD1P-201ENST00000295112 541 ntBASIC18.5■□□□□ 0.55
RNF4P78317 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
RNF4P78317 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.5■□□□□ 0.55
RNF4P78317 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC18.5■□□□□ 0.55
RNF4P78317 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.5■□□□□ 0.55
RNF4P78317 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC18.5■□□□□ 0.55
RNF4P78317 MMD2-204ENST00000612910 778 ntTSL 5 BASIC18.5■□□□□ 0.55
RNF4P78317 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.5■□□□□ 0.55
RNF4P78317 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC18.5■□□□□ 0.55
RNF4P78317 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RNF4P78317 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
RNF4P78317 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC18.5■□□□□ 0.55
RNF4P78317 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RNF4P78317 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC18.49■□□□□ 0.55
RNF4P78317 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF4P78317 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.49■□□□□ 0.55
RNF4P78317 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RNF4P78317 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC18.49■□□□□ 0.55
RNF4P78317 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
RNF4P78317 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
RNF4P78317 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF4P78317 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC18.49■□□□□ 0.55
RNF4P78317 RPS2P52-201ENST00000469610 820 ntBASIC18.49■□□□□ 0.55
RNF4P78317 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.49■□□□□ 0.55
RNF4P78317 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.49■□□□□ 0.55
RNF4P78317 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC18.49■□□□□ 0.55
RNF4P78317 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC18.49■□□□□ 0.55
RNF4P78317 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RNF4P78317 AC233263.1-201ENST00000578059 224 ntBASIC18.49■□□□□ 0.55
RNF4P78317 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF4P78317 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF4P78317 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RNF4P78317 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF4P78317 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC18.49■□□□□ 0.55
RNF4P78317 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF4P78317 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF4P78317 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC18.49■□□□□ 0.55
RNF4P78317 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF4P78317 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF4P78317 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.49■□□□□ 0.55
RNF4P78317 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.48■□□□□ 0.55
RNF4P78317 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
RNF4P78317 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RNF4P78317 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
RNF4P78317 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RNF4P78317 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RNF4P78317 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.48■□□□□ 0.55
RNF4P78317 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
RNF4P78317 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC18.48■□□□□ 0.55
RNF4P78317 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
RNF4P78317 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
RNF4P78317 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RNF4P78317 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RNF4P78317 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC18.48■□□□□ 0.55
RNF4P78317 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RNF4P78317 KRT16P6-202ENST00000425692 1426 ntBASIC18.48■□□□□ 0.55
RNF4P78317 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RNF4P78317 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RNF4P78317 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
RNF4P78317 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RNF4P78317 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC18.47■□□□□ 0.55
RNF4P78317 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RNF4P78317 AC092667.1-201ENST00000434301 2586 ntBASIC18.47■□□□□ 0.55
RNF4P78317 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RNF4P78317 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RNF4P78317 AL512408.1-201ENST00000569378 2000 ntBASIC18.47■□□□□ 0.55
RNF4P78317 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RNF4P78317 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RNF4P78317 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
RNF4P78317 AC124283.5-201ENST00000624661 1809 ntBASIC18.47■□□□□ 0.55
RNF4P78317 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RNF4P78317 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
RNF4P78317 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RNF4P78317 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
RNF4P78317 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.47■□□□□ 0.55
RNF4P78317 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RNF4P78317 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC18.47■□□□□ 0.55
RNF4P78317 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC18.47■□□□□ 0.55
RNF4P78317 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
RNF4P78317 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RNF4P78317 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RNF4P78317 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RNF4P78317 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RNF4P78317 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RNF4P78317 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RNF4P78317 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC18.46■□□□□ 0.55
RNF4P78317 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
RNF4P78317 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RNF4P78317 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
RNF4P78317 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC18.46■□□□□ 0.55
RNF4P78317 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RNF4P78317 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms