Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TNFRSF4P43489 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TNFRSF4P43489 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC20.18■□□□□ 0.82
TNFRSF4P43489 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.18■□□□□ 0.82
TNFRSF4P43489 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TNFRSF4P43489 AC116562.2-201ENST00000507042 360 ntBASIC20.18■□□□□ 0.82
TNFRSF4P43489 PPOX-219ENST00000544598 813 ntTSL 2 BASIC20.18■□□□□ 0.82
TNFRSF4P43489 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
TNFRSF4P43489 AC006128.1-201ENST00000624704 1661 ntBASIC20.18■□□□□ 0.82
TNFRSF4P43489 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
TNFRSF4P43489 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
TNFRSF4P43489 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
TNFRSF4P43489 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.18■□□□□ 0.82
TNFRSF4P43489 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TNFRSF4P43489 KRT16P1-201ENST00000399124 1418 ntBASIC20.18■□□□□ 0.82
TNFRSF4P43489 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TNFRSF4P43489 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
TNFRSF4P43489 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TNFRSF4P43489 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TNFRSF4P43489 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
TNFRSF4P43489 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TNFRSF4P43489 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC20.17■□□□□ 0.82
TNFRSF4P43489 RCN1P1-201ENST00000400413 996 ntBASIC20.17■□□□□ 0.82
TNFRSF4P43489 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC20.17■□□□□ 0.82
TNFRSF4P43489 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC20.17■□□□□ 0.82
TNFRSF4P43489 TK2-213ENST00000563369 882 ntTSL 5 BASIC20.17■□□□□ 0.82
TNFRSF4P43489 GLDC-219ENST00000640208 420 ntTSL 2 BASIC20.17■□□□□ 0.82
TNFRSF4P43489 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
TNFRSF4P43489 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
TNFRSF4P43489 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TNFRSF4P43489 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC20.17■□□□□ 0.82
TNFRSF4P43489 AC079834.2-201ENST00000609776 1949 ntBASIC20.17■□□□□ 0.82
TNFRSF4P43489 KRT16P6-202ENST00000425692 1426 ntBASIC20.17■□□□□ 0.82
TNFRSF4P43489 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TNFRSF4P43489 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
TNFRSF4P43489 AC079598.2-202ENST00000546624 1451 ntBASIC20.17■□□□□ 0.82
TNFRSF4P43489 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
TNFRSF4P43489 AP006587.1-201ENST00000534129 1502 ntBASIC20.17■□□□□ 0.82
TNFRSF4P43489 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
TNFRSF4P43489 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TNFRSF4P43489 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TNFRSF4P43489 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TNFRSF4P43489 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TNFRSF4P43489 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TNFRSF4P43489 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TNFRSF4P43489 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC20.16■□□□□ 0.82
TNFRSF4P43489 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.16■□□□□ 0.82
TNFRSF4P43489 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC20.16■□□□□ 0.82
TNFRSF4P43489 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC20.16■□□□□ 0.82
TNFRSF4P43489 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TNFRSF4P43489 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
TNFRSF4P43489 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.16■□□□□ 0.82
TNFRSF4P43489 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC20.16■□□□□ 0.82
TNFRSF4P43489 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
TNFRSF4P43489 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TNFRSF4P43489 DPP3P2-201ENST00000416030 1696 ntBASIC20.16■□□□□ 0.82
TNFRSF4P43489 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TNFRSF4P43489 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TNFRSF4P43489 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TNFRSF4P43489 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
TNFRSF4P43489 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.15■□□□□ 0.82
TNFRSF4P43489 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
TNFRSF4P43489 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.15■□□□□ 0.82
TNFRSF4P43489 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TNFRSF4P43489 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
TNFRSF4P43489 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
TNFRSF4P43489 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TNFRSF4P43489 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TNFRSF4P43489 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
TNFRSF4P43489 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC20.15■□□□□ 0.82
TNFRSF4P43489 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC20.15■□□□□ 0.82
TNFRSF4P43489 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC20.15■□□□□ 0.82
TNFRSF4P43489 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC20.15■□□□□ 0.82
TNFRSF4P43489 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TNFRSF4P43489 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TNFRSF4P43489 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.15■□□□□ 0.82
TNFRSF4P43489 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
TNFRSF4P43489 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
TNFRSF4P43489 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.14■□□□□ 0.81
TNFRSF4P43489 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.14■□□□□ 0.81
TNFRSF4P43489 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.14■□□□□ 0.81
TNFRSF4P43489 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.14■□□□□ 0.81
TNFRSF4P43489 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.14■□□□□ 0.81
TNFRSF4P43489 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TNFRSF4P43489 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TNFRSF4P43489 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
TNFRSF4P43489 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
TNFRSF4P43489 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TNFRSF4P43489 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.14■□□□□ 0.81
TNFRSF4P43489 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC20.14■□□□□ 0.81
TNFRSF4P43489 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC20.14■□□□□ 0.81
TNFRSF4P43489 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC20.14■□□□□ 0.81
TNFRSF4P43489 AC145285.6-201ENST00000604632 637 ntBASIC20.14■□□□□ 0.81
TNFRSF4P43489 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC20.14■□□□□ 0.81
TNFRSF4P43489 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC20.14■□□□□ 0.81
TNFRSF4P43489 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TNFRSF4P43489 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
TNFRSF4P43489 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC20.14■□□□□ 0.81
TNFRSF4P43489 AC007225.1-201ENST00000566331 1836 ntBASIC20.13■□□□□ 0.81
TNFRSF4P43489 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms