Protein–RNA interactions for Protein: P40318

SSM4, ERAD-associated E3 ubiquitin-protein ligase DOA10, yeastyeast

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSM4P40318 YKL145W-AYKL145W-A 93 nt0.94□□□□□ -2.26
SSM4P40318 RKR1YMR247C 4689 nt0.94□□□□□ -2.26
SSM4P40318 YGL188C-AYGL188C-A 141 nt0.93□□□□□ -2.26
SSM4P40318 YLR282CYLR282C 342 nt0.93□□□□□ -2.26
SSM4P40318 YOL155W-AYOL155W-A 135 nt0.93□□□□□ -2.26
SSM4P40318 YBR182C-AYBR182C-A 195 nt0.93□□□□□ -2.26
SSM4P40318 NPR2YEL062W 1848 nt0.93□□□□□ -2.26
SSM4P40318 COY1YKL179C 2040 nt0.93□□□□□ -2.26
SSM4P40318 FMP27YLR454W 7887 nt0.93□□□□□ -2.26
SSM4P40318 COX5BYIL111W 456 nt0.92□□□□□ -2.26
SSM4P40318 YKU70YMR284W 1809 nt0.92□□□□□ -2.26
SSM4P40318 CHS6YJL099W 2241 nt0.92□□□□□ -2.26
SSM4P40318 PRP5YBR237W 2550 nt0.91□□□□□ -2.26
SSM4P40318 YGL123C-AYGL123C-A 231 nt0.91□□□□□ -2.26
SSM4P40318 COX12YLR038C 252 nt0.9□□□□□ -2.26
SSM4P40318 FYV10YIL097W 1551 nt0.9□□□□□ -2.26
SSM4P40318 ULP2YIL031W 3105 nt0.9□□□□□ -2.27
SSM4P40318 YCR022CYCR022C 345 nt0.89□□□□□ -2.27
SSM4P40318 YKL100W-AYKL100W-A 90 nt0.89□□□□□ -2.27
SSM4P40318 ABF2YMR072W 552 nt0.89□□□□□ -2.27
SSM4P40318 BLI1YKL061W 342 nt0.89□□□□□ -2.27
SSM4P40318 YLR041WYLR041W 321 nt0.89□□□□□ -2.27
SSM4P40318 YOR161W-AYOR161W-A 81 nt0.89□□□□□ -2.27
SSM4P40318 YSP1YHR155W 3687 nt0.88□□□□□ -2.27
SSM4P40318 BEM3YPL115C 3387 nt0.88□□□□□ -2.27
SSM4P40318 YIL134C-AYIL134C-A 204 nt0.88□□□□□ -2.27
SSM4P40318 ULI1YFR026C 510 nt0.87□□□□□ -2.27
SSM4P40318 YGL041CYGL041C 204 nt0.86□□□□□ -2.27
SSM4P40318 YML002WYML002W 2214 nt0.85□□□□□ -2.27
SSM4P40318 snR8snR8 190 nt0.84□□□□□ -2.28
SSM4P40318 OST4YDL232W 111 nt0.84□□□□□ -2.28
SSM4P40318 TRS65YGR166W 1683 nt0.83□□□□□ -2.28
SSM4P40318 YIL002W-AYIL002W-A 210 nt0.82□□□□□ -2.28
SSM4P40318 YDR366CYDR366C 399 nt0.81□□□□□ -2.28
SSM4P40318 tN(GUU)QtN(GUU)Q 71 nt0.81□□□□□ -2.28
SSM4P40318 YOR345CYOR345C 351 nt0.81□□□□□ -2.28
SSM4P40318 PRP42YDR235W 1635 nt0.81□□□□□ -2.28
SSM4P40318 UTP8YGR128C 2142 nt0.8□□□□□ -2.28
SSM4P40318 snR80snR80 171 nt0.8□□□□□ -2.28
SSM4P40318 YER053C-AYER053C-A 114 nt0.8□□□□□ -2.28
SSM4P40318 YOR302WYOR302W 78 nt0.79□□□□□ -2.28
SSM4P40318 YPR159C-AYPR159C-A 102 nt0.79□□□□□ -2.28
SSM4P40318 YJL127W-AYJL127W-A 117 nt0.78□□□□□ -2.28
SSM4P40318 IQG1YPL242C 4488 nt0.78□□□□□ -2.29
SSM4P40318 YCR038W-AYCR038W-A 126 nt0.76□□□□□ -2.29
SSM4P40318 YNL097C-BYNL097C-B 123 nt0.76□□□□□ -2.29
SSM4P40318 APQ12YIL040W 417 nt0.75□□□□□ -2.29
SSM4P40318 YHR131W-AYHR131W-A 246 nt0.74□□□□□ -2.29
SSM4P40318 AI1Q0050 2505 nt0.73□□□□□ -2.29
SSM4P40318 TAH1YCR060W 336 nt0.72□□□□□ -2.29
SSM4P40318 YBR131C-AYBR131C-A 90 nt0.72□□□□□ -2.29
SSM4P40318 RPM2YML091C 3609 nt0.72□□□□□ -2.29
SSM4P40318 BUL2YML111W 2763 nt0.7□□□□□ -2.3
SSM4P40318 MLP1YKR095W 5628 nt0.69□□□□□ -2.3
SSM4P40318 SNU13YEL026W 381 nt0.68□□□□□ -2.3
SSM4P40318 THO2YNL139C 4794 nt0.68□□□□□ -2.3
SSM4P40318 YMR272W-AYMR272W-A 114 nt0.67□□□□□ -2.3
SSM4P40318 PRP39YML046W 1890 nt0.67□□□□□ -2.3
SSM4P40318 PET111YMR257C 2403 nt0.66□□□□□ -2.3
SSM4P40318 MYO1YHR023W 5787 nt0.65□□□□□ -2.31
SSM4P40318 NNF2YGR089W 2811 nt0.64□□□□□ -2.31
SSM4P40318 YLR232WYLR232W 348 nt0.61□□□□□ -2.31
SSM4P40318 MLP2YIL149C 5040 nt0.59□□□□□ -2.31
SSM4P40318 YJL182CYJL182C 318 nt0.59□□□□□ -2.32
SSM4P40318 snR46snR46 197 nt0.59□□□□□ -2.32
SSM4P40318 NIP1YMR309C 2439 nt0.59□□□□□ -2.32
SSM4P40318 YNL054W-BYNL054W-B 5250 nt0.57□□□□□ -2.32
SSM4P40318 RPS26AYGL189C 360 nt0.57□□□□□ -2.32
SSM4P40318 UTP10YJL109C 5310 nt0.56□□□□□ -2.32
SSM4P40318 SBH1YER087C-B 249 nt0.56□□□□□ -2.32
SSM4P40318 YLL006W-AYLL006W-A 177 nt0.56□□□□□ -2.32
SSM4P40318 YBL039C-AYBL039C-A 84 nt0.56□□□□□ -2.32
SSM4P40318 YJL113WYJL113W 4647 nt0.55□□□□□ -2.32
SSM4P40318 YDR371C-AYDR371C-A 105 nt0.55□□□□□ -2.32
SSM4P40318 YER078W-AYER078W-A 165 nt0.55□□□□□ -2.32
SSM4P40318 YEL014CYEL014C 306 nt0.54□□□□□ -2.32
SSM4P40318 SPG3YDR504C 384 nt0.53□□□□□ -2.32
SSM4P40318 YBR072C-AYBR072C-A 162 nt0.53□□□□□ -2.32
SSM4P40318 ESP1YGR098C 4893 nt0.52□□□□□ -2.33
SSM4P40318 YGL182CYGL182C 324 nt0.52□□□□□ -2.33
SSM4P40318 YMR046W-AYMR046W-A 129 nt0.51□□□□□ -2.33
SSM4P40318 YMR158W-BYMR158W-B 321 nt0.51□□□□□ -2.33
SSM4P40318 GLG1YKR058W 1851 nt0.5□□□□□ -2.33
SSM4P40318 ORC3YLL004W 1851 nt0.48□□□□□ -2.33
SSM4P40318 YEL073CYEL073C 324 nt0.46□□□□□ -2.34
SSM4P40318 JLP2YMR132C 627 nt0.46□□□□□ -2.34
SSM4P40318 YBL100W-BYBL100W-B 5313 nt0.46□□□□□ -2.34
SSM4P40318 YPL060C-AYPL060C-A 3315 nt0.46□□□□□ -2.34
SSM4P40318 SDH6YDR379C-A 240 nt0.45□□□□□ -2.34
SSM4P40318 tM(CAU)Q1tM(CAU)Q1 76 nt0.44□□□□□ -2.34
SSM4P40318 YOR170WYOR170W 306 nt0.44□□□□□ -2.34
SSM4P40318 YOR381W-AYOR381W-A 168 nt0.44□□□□□ -2.34
SSM4P40318 COG6YNL041C 2520 nt0.44□□□□□ -2.34
SSM4P40318 RCO1YMR075W 2055 nt0.44□□□□□ -2.34
SSM4P40318 YDR406W-AYDR406W-A 246 nt0.43□□□□□ -2.34
SSM4P40318 YDR544CYDR544C 429 nt0.43□□□□□ -2.34
SSM4P40318 YOR314W-AYOR314W-A 111 nt0.42□□□□□ -2.34
SSM4P40318 YLR342W-AYLR342W-A 174 nt0.41□□□□□ -2.34
SSM4P40318 snR52snR52 92 nt0.41□□□□□ -2.34
SSM4P40318 YOR186C-AYOR186C-A 210 nt0.35□□□□□ -2.35
Retrieved 100 of 7,029 protein–RNA pairs in 88.6 ms