Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC8.07□□□□□ -1.12
MSX1P28360 NAPA-AS1-202ENST00000594367 630 ntTSL 2 BASIC8.07□□□□□ -1.12
MSX1P28360 AC005614.2-201ENST00000595508 461 ntTSL 5 BASIC8.07□□□□□ -1.12
MSX1P28360 AC079315.1-201ENST00000602952 623 ntBASIC8.07□□□□□ -1.12
MSX1P28360 AL133351.4-201ENST00000604204 631 ntBASIC8.07□□□□□ -1.12
MSX1P28360 AC133552.5-201ENST00000604266 540 ntBASIC8.07□□□□□ -1.12
MSX1P28360 VIPR1-AS1-221ENST00000626992 602 ntTSL 5 BASIC8.07□□□□□ -1.12
MSX1P28360 ENPP6-201ENST00000296741 3936 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
MSX1P28360 ASIC5-201ENST00000537611 1692 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
MSX1P28360 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC8.07□□□□□ -1.12
MSX1P28360 AC007382.1-201ENST00000624376 2618 ntBASIC8.07□□□□□ -1.12
MSX1P28360 ANO2-202ENST00000356134 3717 ntAPPRIS P2 TSL 5 BASIC8.07□□□□□ -1.12
MSX1P28360 CRTAM-201ENST00000227348 2469 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
MSX1P28360 FAM13C-214ENST00000611933 3033 ntAPPRIS ALT2 TSL 1 (best) BASIC8.07□□□□□ -1.12
MSX1P28360 CEP57L1-202ENST00000368968 1649 ntAPPRIS ALT2 TSL 2 BASIC8.07□□□□□ -1.12
MSX1P28360 LIMCH1-218ENST00000513024 5129 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
MSX1P28360 CAST-244ENST00000515663 1473 ntTSL 2 BASIC8.06□□□□□ -1.12
MSX1P28360 AC091132.4-201ENST00000587960 2262 ntBASIC8.06□□□□□ -1.12
MSX1P28360 FXR1-203ENST00000445140 2651 ntAPPRIS ALT2 TSL 1 (best) BASIC8.06□□□□□ -1.12
MSX1P28360 AC118282.4-201ENST00000623090 1712 ntBASIC8.06□□□□□ -1.12
MSX1P28360 XIST-211ENST00000635841 1734 ntTSL 5 BASIC8.06□□□□□ -1.12
MSX1P28360 MCM10-206ENST00000484800 3157 ntAPPRIS P4 TSL 1 (best) BASIC8.06□□□□□ -1.12
MSX1P28360 RAB36-201ENST00000263116 3828 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
MSX1P28360 FGA-202ENST00000403106 2248 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
MSX1P28360 FAM111A-202ENST00000420244 3780 ntAPPRIS P1 TSL 3 BASIC8.06□□□□□ -1.12
MSX1P28360 GRB10-209ENST00000406641 2700 ntTSL 5 BASIC8.06□□□□□ -1.12
MSX1P28360 NCKAP1L-202ENST00000545638 3612 ntTSL 2 BASIC8.06□□□□□ -1.12
MSX1P28360 OSBPL3-203ENST00000396431 2969 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
MSX1P28360 CEACAM8-201ENST00000244336 2305 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
MSX1P28360 KCNJ15-207ENST00000398934 2815 ntAPPRIS P1 TSL 3 BASIC8.06□□□□□ -1.12
MSX1P28360 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC8.06□□□□□ -1.12
MSX1P28360 SSX2-202ENST00000337502 1292 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
MSX1P28360 NACA3P-201ENST00000359690 648 ntBASIC8.06□□□□□ -1.12
MSX1P28360 CST9LP1-201ENST00000376987 444 ntBASIC8.06□□□□□ -1.12
MSX1P28360 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC8.06□□□□□ -1.12
MSX1P28360 MIR637-201ENST00000385000 99 ntBASIC8.06□□□□□ -1.12
MSX1P28360 SERPINB8-204ENST00000397988 1178 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
MSX1P28360 RNU2-66P-201ENST00000410650 161 ntBASIC8.06□□□□□ -1.12
MSX1P28360 RNU2-41P-201ENST00000410991 178 ntBASIC8.06□□□□□ -1.12
MSX1P28360 RNU4-74P-201ENST00000411280 161 ntBASIC8.06□□□□□ -1.12
MSX1P28360 OR51A5P-201ENST00000415429 942 ntBASIC8.06□□□□□ -1.12
MSX1P28360 SOX9-AS1-203ENST00000424417 576 ntTSL 4 BASIC8.06□□□□□ -1.12
MSX1P28360 C1DP1-201ENST00000426049 402 ntBASIC8.06□□□□□ -1.12
MSX1P28360 AC104651.1-201ENST00000427559 735 ntBASIC8.06□□□□□ -1.12
MSX1P28360 CCNB1IP1P2-201ENST00000432876 818 ntBASIC8.06□□□□□ -1.12
MSX1P28360 HSD52-202ENST00000436225 772 ntTSL 3 BASIC8.06□□□□□ -1.12
MSX1P28360 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC8.06□□□□□ -1.12
MSX1P28360 AC007237.1-201ENST00000442074 499 ntBASIC8.06□□□□□ -1.12
MSX1P28360 TULP3P1-201ENST00000442322 816 ntTSL 3 BASIC8.06□□□□□ -1.12
MSX1P28360 AC006463.1-201ENST00000445929 232 ntBASIC8.06□□□□□ -1.12
MSX1P28360 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC8.06□□□□□ -1.12
MSX1P28360 AL445189.2-201ENST00000447543 259 ntBASIC8.06□□□□□ -1.12
MSX1P28360 LDHAP3-201ENST00000448312 1008 ntBASIC8.06□□□□□ -1.12
MSX1P28360 AL034418.1-201ENST00000448675 860 ntBASIC8.06□□□□□ -1.12
MSX1P28360 PHBP9-201ENST00000453578 825 ntBASIC8.06□□□□□ -1.12
MSX1P28360 SEC62-AS1-201ENST00000479626 346 ntTSL 5 BASIC8.06□□□□□ -1.12
MSX1P28360 AC096743.1-201ENST00000485172 319 ntBASIC8.06□□□□□ -1.12
MSX1P28360 RN7SL573P-201ENST00000485340 276 ntBASIC8.06□□□□□ -1.12
MSX1P28360 MTND5P5-201ENST00000503764 376 ntBASIC8.06□□□□□ -1.12
MSX1P28360 Z99943.2-201ENST00000507585 266 ntBASIC8.06□□□□□ -1.12
MSX1P28360 GNGT2-203ENST00000507680 585 ntAPPRIS P1 TSL 4 BASIC8.06□□□□□ -1.12
MSX1P28360 GNGT2-206ENST00000515635 783 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
MSX1P28360 MED28P5-201ENST00000528254 438 ntBASIC8.06□□□□□ -1.12
MSX1P28360 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC8.06□□□□□ -1.12
MSX1P28360 FLVCR2-202ENST00000539311 1221 ntTSL 2 BASIC8.06□□□□□ -1.12
MSX1P28360 STXBP6-206ENST00000548369 682 ntTSL 2 BASIC8.06□□□□□ -1.12
MSX1P28360 AC011603.2-202ENST00000552893 504 ntTSL 3 BASIC8.06□□□□□ -1.12
MSX1P28360 AC009120.2-202ENST00000566411 679 ntTSL 3 BASIC8.06□□□□□ -1.12
MSX1P28360 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC8.06□□□□□ -1.12
MSX1P28360 PDLIM1P3-201ENST00000582370 599 ntBASIC8.06□□□□□ -1.12
MSX1P28360 AC005180.1-201ENST00000591137 587 ntTSL 4 BASIC8.06□□□□□ -1.12
MSX1P28360 AC006539.2-201ENST00000601729 572 ntBASIC8.06□□□□□ -1.12
MSX1P28360 AC119501.1-201ENST00000603646 475 ntBASIC8.06□□□□□ -1.12
MSX1P28360 AC069545.1-201ENST00000605671 358 ntBASIC8.06□□□□□ -1.12
MSX1P28360 AL121757.2-201ENST00000611223 313 ntBASIC8.06□□□□□ -1.12
MSX1P28360 FAM238B-204ENST00000612040 423 ntBASIC8.06□□□□□ -1.12
MSX1P28360 MGST2-207ENST00000616265 1278 ntAPPRIS P1 TSL 4 BASIC8.06□□□□□ -1.12
MSX1P28360 Metazoa_SRP.132-201ENST00000619251 285 ntBASIC8.06□□□□□ -1.12
MSX1P28360 AC009120.2-201ENST00000620711 522 ntTSL 3 BASIC8.06□□□□□ -1.12
MSX1P28360 AL356321.1-201ENST00000621360 228 ntBASIC8.06□□□□□ -1.12
MSX1P28360 SNHG5-218ENST00000623901 711 ntTSL 5 BASIC8.06□□□□□ -1.12
MSX1P28360 AC027176.3-201ENST00000624460 586 ntBASIC8.06□□□□□ -1.12
MSX1P28360 SAMD12-AS1-201ENST00000625758 718 ntTSL 5 BASIC8.06□□□□□ -1.12
MSX1P28360 ADD3-AS1-203ENST00000625954 472 ntTSL 3 BASIC8.06□□□□□ -1.12
MSX1P28360 ELP3-210ENST00000521015 3158 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
MSX1P28360 C1orf21-201ENST00000235307 10265 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
MSX1P28360 BICC1-201ENST00000263103 1763 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
MSX1P28360 FAM13A-202ENST00000395002 4945 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
MSX1P28360 GFM2-207ENST00000509430 3047 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
MSX1P28360 LINC01721-201ENST00000457274 2376 ntTSL 2 BASIC8.06□□□□□ -1.12
MSX1P28360 LINC00920-201ENST00000499966 2147 ntTSL 2 BASIC8.06□□□□□ -1.12
MSX1P28360 ABL2-206ENST00000504405 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC8.06□□□□□ -1.12
MSX1P28360 AC011330.1-201ENST00000510070 3235 ntBASIC8.06□□□□□ -1.12
MSX1P28360 AC134508.1-201ENST00000570082 2977 ntBASIC8.06□□□□□ -1.12
MSX1P28360 NPL-201ENST00000258317 2461 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
MSX1P28360 AC037487.1-201ENST00000583416 2474 ntTSL 5 BASIC8.06□□□□□ -1.12
MSX1P28360 AC104574.2-201ENST00000559783 1985 ntTSL 3 BASIC8.06□□□□□ -1.12
MSX1P28360 KEL-201ENST00000355265 2812 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
MSX1P28360 COG2-201ENST00000366668 2843 ntAPPRIS ALT1 TSL 1 (best) BASIC8.06□□□□□ -1.12
MSX1P28360 TCF4-246ENST00000570287 3163 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 120.7 ms