Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RPS26P6-201ENST00000475156 348 ntBASIC11.75□□□□□ -0.53
CUX1P39880 AC066616.1-201ENST00000486795 413 ntBASIC11.75□□□□□ -0.53
CUX1P39880 ACTG1P15-201ENST00000570019 1063 ntBASIC11.75□□□□□ -0.53
CUX1P39880 STRADA-207ENST00000578008 1153 ntTSL 5 BASIC11.75□□□□□ -0.53
CUX1P39880 ZNF235-204ENST00000589799 955 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CUX1P39880 Z98949.1-213ENST00000608921 856 ntTSL 5 BASIC11.75□□□□□ -0.53
CUX1P39880 TSPAN6-205ENST00000614008 900 ntTSL 5 BASIC11.75□□□□□ -0.53
CUX1P39880 AL049767.1-201ENST00000636811 514 ntTSL 5 BASIC11.75□□□□□ -0.53
CUX1P39880 THAP12P6-201ENST00000431978 2310 ntBASIC11.75□□□□□ -0.53
CUX1P39880 DDHD1-203ENST00000395606 12769 ntAPPRIS ALT2 TSL 2 BASIC11.75□□□□□ -0.53
CUX1P39880 HM13-224ENST00000498035 3932 ntTSL 2 BASIC11.75□□□□□ -0.53
CUX1P39880 SSX7-201ENST00000298181 1311 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
CUX1P39880 MAP3K20-AS1-203ENST00000423106 2538 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
CUX1P39880 NSD2-219ENST00000508803 4251 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CUX1P39880 ZNF252P-201ENST00000426361 5210 ntTSL 4 BASIC11.74□□□□□ -0.53
CUX1P39880 MIGA1-202ENST00000443751 6409 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
CUX1P39880 MTMR10-201ENST00000435680 4961 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CUX1P39880 AC000099.1-202ENST00000413812 1912 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
CUX1P39880 AKAP12-203ENST00000359755 6190 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
CUX1P39880 NBPF14-201ENST00000581201 2931 ntTSL 5 BASIC11.74□□□□□ -0.53
CUX1P39880 MGST2-201ENST00000265498 801 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CUX1P39880 AC068888.2-201ENST00000435621 536 ntTSL 3 BASIC11.74□□□□□ -0.53
CUX1P39880 GAPDHP59-201ENST00000435908 267 ntBASIC11.74□□□□□ -0.53
CUX1P39880 AC092164.1-201ENST00000452212 726 ntTSL 2 BASIC11.74□□□□□ -0.53
CUX1P39880 TNS3-209ENST00000458317 1156 ntTSL 5 BASIC11.74□□□□□ -0.53
CUX1P39880 AL161757.4-202ENST00000557467 737 ntTSL 3 BASIC11.74□□□□□ -0.53
CUX1P39880 AC005726.4-201ENST00000582858 458 ntBASIC11.74□□□□□ -0.53
CUX1P39880 HNRNPA3P9-201ENST00000604913 979 ntBASIC11.74□□□□□ -0.53
CUX1P39880 RXFP1-207ENST00000470033 2175 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
CUX1P39880 AC097478.1-207ENST00000612706 2422 ntTSL 5 BASIC11.74□□□□□ -0.53
CUX1P39880 ZNF568-215ENST00000617745 2441 ntTSL 5 BASIC11.74□□□□□ -0.53
CUX1P39880 OPTN-203ENST00000378748 3521 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
CUX1P39880 ATP8A2-204ENST00000381655 9575 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CUX1P39880 BBOX1-204ENST00000528583 1724 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CUX1P39880 PARP4-201ENST00000381989 5474 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CUX1P39880 OR11G2-203ENST00000641879 4415 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
CUX1P39880 KLHL5-201ENST00000261425 3425 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CUX1P39880 DIP2C-202ENST00000381496 7749 ntTSL 5 BASIC11.73□□□□□ -0.53
CUX1P39880 ZNF286A-221ENST00000593105 5222 ntTSL 3 BASIC11.73□□□□□ -0.53
CUX1P39880 RNA5SP122-201ENST00000384457 108 ntBASIC11.73□□□□□ -0.53
CUX1P39880 VN1R3-201ENST00000418822 919 ntBASIC11.73□□□□□ -0.53
CUX1P39880 AL358394.1-201ENST00000422807 535 ntTSL 2 BASIC11.73□□□□□ -0.53
CUX1P39880 AC245014.1-201ENST00000427732 381 ntTSL 5 BASIC11.73□□□□□ -0.53
CUX1P39880 KCTD9P1-201ENST00000430462 1167 ntBASIC11.73□□□□□ -0.53
CUX1P39880 RPS10P21-201ENST00000430654 475 ntBASIC11.73□□□□□ -0.53
CUX1P39880 COL11A2P1-205ENST00000441798 676 ntBASIC11.73□□□□□ -0.53
CUX1P39880 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC11.73□□□□□ -0.53
CUX1P39880 Z83838.1-202ENST00000456225 839 ntBASIC11.73□□□□□ -0.53
CUX1P39880 AC012158.1-202ENST00000482431 1132 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
CUX1P39880 AC093870.1-201ENST00000506837 213 ntBASIC11.73□□□□□ -0.53
CUX1P39880 AC131094.1-201ENST00000506984 490 ntTSL 2 BASIC11.73□□□□□ -0.53
CUX1P39880 AC025162.2-201ENST00000619602 560 ntBASIC11.73□□□□□ -0.53
CUX1P39880 AC119674.1-201ENST00000641611 1210 ntBASIC11.73□□□□□ -0.53
CUX1P39880 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC11.73□□□□□ -0.53
CUX1P39880 SLC30A8-201ENST00000427715 5430 ntTSL 2 BASIC11.73□□□□□ -0.53
CUX1P39880 EIF4G3-201ENST00000264211 5802 ntAPPRIS P3 TSL 5 BASIC11.73□□□□□ -0.53
CUX1P39880 TNIK-210ENST00000470834 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
CUX1P39880 KIF15-201ENST00000326047 4842 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CUX1P39880 ESPL1-201ENST00000257934 6623 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
CUX1P39880 COL4A6-208ENST00000538570 6528 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
CUX1P39880 ZNF217-201ENST00000302342 5633 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
CUX1P39880 AC012668.3-202ENST00000417485 1642 ntTSL 5 BASIC11.72□□□□□ -0.53
CUX1P39880 FOXN3-202ENST00000345097 7832 ntAPPRIS ALT1 TSL 1 (best) BASIC11.72□□□□□ -0.53
CUX1P39880 UBXN8-201ENST00000265616 1450 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
CUX1P39880 GIP-201ENST00000357424 716 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
CUX1P39880 SERHL2-204ENST00000407614 521 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
CUX1P39880 SULT1C2-204ENST00000409880 1206 ntTSL 3 BASIC11.72□□□□□ -0.53
CUX1P39880 AC012462.2-201ENST00000414756 391 ntTSL 3 BASIC11.72□□□□□ -0.53
CUX1P39880 DPP10-AS1-202ENST00000448663 644 ntTSL 3 BASIC11.72□□□□□ -0.53
CUX1P39880 AC096922.1-201ENST00000461635 651 ntBASIC11.72□□□□□ -0.53
CUX1P39880 CLEC7A-208ENST00000525605 573 ntTSL 4 BASIC11.72□□□□□ -0.53
CUX1P39880 TDGP1-201ENST00000543961 1229 ntBASIC11.72□□□□□ -0.53
CUX1P39880 OLR1-209ENST00000543993 822 ntTSL 2 BASIC11.72□□□□□ -0.53
CUX1P39880 LINC02413-201ENST00000549914 723 ntTSL 5 BASIC11.72□□□□□ -0.53
CUX1P39880 AC026458.1-201ENST00000564330 438 ntBASIC11.72□□□□□ -0.53
CUX1P39880 AC006328.2-201ENST00000623198 397 ntBASIC11.72□□□□□ -0.53
CUX1P39880 AC012005.2-201ENST00000624333 397 ntBASIC11.72□□□□□ -0.53
CUX1P39880 C7orf31-202ENST00000409280 3357 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
CUX1P39880 DLG2-218ENST00000524982 2872 ntTSL 2 BASIC11.72□□□□□ -0.53
CUX1P39880 LINC02418-202ENST00000567788 4592 ntTSL 2 BASIC11.72□□□□□ -0.53
CUX1P39880 PTPDC1-204ENST00000620992 4437 ntAPPRIS ALT2 TSL 2 BASIC11.72□□□□□ -0.53
CUX1P39880 ERG-204ENST00000398907 4809 ntTSL 5 BASIC11.72□□□□□ -0.53
CUX1P39880 TXLNB-201ENST00000358430 4753 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
CUX1P39880 GULP1-203ENST00000409609 1932 ntAPPRIS P3 TSL 2 BASIC11.72□□□□□ -0.53
CUX1P39880 GABRR1-202ENST00000435811 3106 ntTSL 2 BASIC11.72□□□□□ -0.53
CUX1P39880 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC11.72□□□□□ -0.53
CUX1P39880 TSC22D1-213ENST00000622051 2872 ntTSL 2 BASIC11.72□□□□□ -0.53
CUX1P39880 ARHGAP32-206ENST00000527272 5289 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CUX1P39880 IFIT1P1-201ENST00000400497 1449 ntBASIC11.71□□□□□ -0.53
CUX1P39880 OR13F1-201ENST00000334726 960 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
CUX1P39880 CFAP70-204ENST00000394865 1222 ntTSL 5 BASIC11.71□□□□□ -0.53
CUX1P39880 NUCKS1P1-201ENST00000452067 703 ntBASIC11.71□□□□□ -0.53
CUX1P39880 PRH1-204ENST00000539853 837 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
CUX1P39880 OR11H12-201ENST00000550708 1085 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
CUX1P39880 AL031722.1-201ENST00000570247 220 ntTSL 5 BASIC11.71□□□□□ -0.53
CUX1P39880 AC063977.7-201ENST00000594454 337 ntBASIC11.71□□□□□ -0.53
CUX1P39880 AC010605.1-201ENST00000597303 797 ntTSL 2 BASIC11.71□□□□□ -0.53
CUX1P39880 GSTCD-211ENST00000515279 4273 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
CUX1P39880 CDC7-203ENST00000428239 3313 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CUX1P39880 LINC01095-202ENST00000507726 1715 ntTSL 2 BASIC11.71□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 390.7 ms