Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AL121873.1-201ENST00000616013 524 ntBASIC8.09□□□□□ -1.11
MSX1P28360 AL591926.6-201ENST00000617375 415 ntBASIC8.09□□□□□ -1.11
MSX1P28360 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC8.09□□□□□ -1.11
MSX1P28360 RN7SL575P-201ENST00000620774 299 ntBASIC8.09□□□□□ -1.11
MSX1P28360 AC012150.2-201ENST00000621300 544 ntBASIC8.09□□□□□ -1.11
MSX1P28360 AC015660.5-201ENST00000623238 564 ntBASIC8.09□□□□□ -1.11
MSX1P28360 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC8.09□□□□□ -1.11
MSX1P28360 AQP4-AS1-206ENST00000628174 919 ntTSL 5 BASIC8.09□□□□□ -1.11
MSX1P28360 AC132825.8-201ENST00000640783 297 ntBASIC8.09□□□□□ -1.11
MSX1P28360 ZNF512-202ENST00000379717 3417 ntAPPRIS ALT1 TSL 5 BASIC8.09□□□□□ -1.11
MSX1P28360 FTO-222ENST00000637969 2889 ntTSL 5 BASIC8.09□□□□□ -1.11
MSX1P28360 ZNF605-202ENST00000360187 9340 ntAPPRIS P3 TSL 1 (best) BASIC8.09□□□□□ -1.11
MSX1P28360 TIAL1-205ENST00000436547 1401 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
MSX1P28360 GAD1-217ENST00000625689 3700 ntTSL 5 BASIC8.09□□□□□ -1.11
MSX1P28360 TBC1D5-209ENST00000429383 3156 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
MSX1P28360 LINC02239-201ENST00000504339 2290 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
MSX1P28360 ZNF233-201ENST00000391958 2784 ntAPPRIS P1 TSL 2 BASIC8.09□□□□□ -1.11
MSX1P28360 DDX53-201ENST00000327968 3629 ntAPPRIS P1 BASIC8.09□□□□□ -1.11
MSX1P28360 AC104619.3-201ENST00000509116 1387 ntBASIC8.09□□□□□ -1.12
MSX1P28360 AC131935.2-201ENST00000623649 1371 ntBASIC8.09□□□□□ -1.12
MSX1P28360 APOL2-202ENST00000358502 2551 ntAPPRIS P2 TSL 1 (best) BASIC8.09□□□□□ -1.12
MSX1P28360 AIM2-202ENST00000368130 1529 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
MSX1P28360 AC008543.1-201ENST00000344893 3383 ntTSL 2 BASIC8.08□□□□□ -1.12
MSX1P28360 LINC01568-201ENST00000554640 2544 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
MSX1P28360 CTAGE9-201ENST00000314099 2334 ntAPPRIS P1 BASIC8.08□□□□□ -1.12
MSX1P28360 SSPO-201ENST00000378016 15589 ntAPPRIS P1 TSL 5 BASIC8.08□□□□□ -1.12
MSX1P28360 PIGN-230ENST00000638977 4601 ntTSL 5 BASIC8.08□□□□□ -1.12
MSX1P28360 ULBP1-201ENST00000229708 3142 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
MSX1P28360 ACPP-201ENST00000336375 3125 ntAPPRIS P3 TSL 1 (best) BASIC8.08□□□□□ -1.12
MSX1P28360 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC8.08□□□□□ -1.12
MSX1P28360 CETN2-201ENST00000370277 1454 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
MSX1P28360 IL13RA2-202ENST00000371936 1498 ntAPPRIS P1 TSL 5 BASIC8.08□□□□□ -1.12
MSX1P28360 AC108463.3-201ENST00000603748 1482 ntBASIC8.08□□□□□ -1.12
MSX1P28360 OR9Q1-202ENST00000612174 2134 ntAPPRIS P1 BASIC8.08□□□□□ -1.12
MSX1P28360 AP000641.1-201ENST00000531988 1639 ntBASIC8.08□□□□□ -1.12
MSX1P28360 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
MSX1P28360 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
MSX1P28360 ZNF610-209ENST00000616431 1772 ntAPPRIS P3 TSL 2 BASIC8.08□□□□□ -1.12
MSX1P28360 NLRP1-204ENST00000354411 4332 ntAPPRIS ALT2 TSL 1 (best) BASIC8.08□□□□□ -1.12
MSX1P28360 SPTAN1-222ENST00000630804 7812 ntTSL 5 BASIC8.08□□□□□ -1.12
MSX1P28360 AMELY-201ENST00000215479 802 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
MSX1P28360 OR7D4-201ENST00000308682 1022 ntAPPRIS P1 BASIC8.08□□□□□ -1.12
MSX1P28360 AC096571.1-201ENST00000325407 306 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
MSX1P28360 Y_RNA.61-201ENST00000362835 102 ntBASIC8.08□□□□□ -1.12
MSX1P28360 PRR32-201ENST00000371125 1228 ntAPPRIS P1 TSL 2 BASIC8.08□□□□□ -1.12
MSX1P28360 U3.17-201ENST00000390863 203 ntBASIC8.08□□□□□ -1.12
MSX1P28360 OR6C69P-201ENST00000394268 893 ntBASIC8.08□□□□□ -1.12
MSX1P28360 EGFLAM-205ENST00000397210 1299 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
MSX1P28360 ATP6V1E1-203ENST00000399798 994 ntTSL 2 BASIC8.08□□□□□ -1.12
MSX1P28360 OR6B1-201ENST00000408922 1055 ntAPPRIS P1 BASIC8.08□□□□□ -1.12
MSX1P28360 RN7SKP251-201ENST00000410830 314 ntBASIC8.08□□□□□ -1.12
MSX1P28360 AC096644.3-201ENST00000416788 338 ntBASIC8.08□□□□□ -1.12
MSX1P28360 FNDC3CP-201ENST00000420795 1155 ntBASIC8.08□□□□□ -1.12
MSX1P28360 AC245054.1-201ENST00000420944 258 ntBASIC8.08□□□□□ -1.12
MSX1P28360 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC8.08□□□□□ -1.12
MSX1P28360 ISCA1P1-201ENST00000426679 387 ntBASIC8.08□□□□□ -1.12
MSX1P28360 AC152007.1-201ENST00000428521 224 ntBASIC8.08□□□□□ -1.12
MSX1P28360 BX119321.1-201ENST00000428912 797 ntBASIC8.08□□□□□ -1.12
MSX1P28360 KCTD9P1-201ENST00000430462 1167 ntBASIC8.08□□□□□ -1.12
MSX1P28360 AL731567.1-201ENST00000435635 462 ntTSL 2 BASIC8.08□□□□□ -1.12
MSX1P28360 CYP2C58P-201ENST00000436281 475 ntBASIC8.08□□□□□ -1.12
MSX1P28360 BACH1-IT2-201ENST00000436529 806 ntTSL 5 BASIC8.08□□□□□ -1.12
MSX1P28360 MTCYBP42-201ENST00000444653 1130 ntBASIC8.08□□□□□ -1.12
MSX1P28360 RPL35P4-201ENST00000446039 322 ntBASIC8.08□□□□□ -1.12
MSX1P28360 AC007327.1-201ENST00000447461 264 ntBASIC8.08□□□□□ -1.12
MSX1P28360 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC8.08□□□□□ -1.12
MSX1P28360 AC003071.1-201ENST00000451219 789 ntBASIC8.08□□□□□ -1.12
MSX1P28360 AC103563.4-201ENST00000454384 368 ntBASIC8.08□□□□□ -1.12
MSX1P28360 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC8.08□□□□□ -1.12
MSX1P28360 PSMD6-AS1-201ENST00000462717 441 ntTSL 3 BASIC8.08□□□□□ -1.12
MSX1P28360 AC107015.1-201ENST00000466902 747 ntBASIC8.08□□□□□ -1.12
MSX1P28360 MNX1-204ENST00000469500 209 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
MSX1P28360 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
MSX1P28360 AC079382.1-201ENST00000493346 557 ntBASIC8.08□□□□□ -1.12
MSX1P28360 PAX8-211ENST00000497038 816 ntTSL 5 BASIC8.08□□□□□ -1.12
MSX1P28360 AC023050.1-201ENST00000498198 304 ntBASIC8.08□□□□□ -1.12
MSX1P28360 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC8.08□□□□□ -1.12
MSX1P28360 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC8.08□□□□□ -1.12
MSX1P28360 PTTG2-201ENST00000504686 691 ntAPPRIS P1 BASIC8.08□□□□□ -1.12
MSX1P28360 AC112198.1-201ENST00000505369 1220 ntBASIC8.08□□□□□ -1.12
MSX1P28360 MTND2P33-201ENST00000506452 1031 ntBASIC8.08□□□□□ -1.12
MSX1P28360 AC117522.1-201ENST00000509821 380 ntBASIC8.08□□□□□ -1.12
MSX1P28360 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
MSX1P28360 IGHV3-36-201ENST00000520848 401 ntBASIC8.08□□□□□ -1.12
MSX1P28360 CA1-219ENST00000523022 1208 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
MSX1P28360 AP001782.1-202ENST00000527774 445 ntTSL 3 BASIC8.08□□□□□ -1.12
MSX1P28360 AC138466.2-201ENST00000540993 304 ntBASIC8.08□□□□□ -1.12
MSX1P28360 FLT1-205ENST00000543394 1275 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
MSX1P28360 BANF2-205ENST00000545418 360 ntTSL 3 BASIC8.08□□□□□ -1.12
MSX1P28360 AL049830.4-201ENST00000555149 351 ntBASIC8.08□□□□□ -1.12
MSX1P28360 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC8.08□□□□□ -1.12
MSX1P28360 AC020687.1-201ENST00000560439 448 ntTSL 3 BASIC8.08□□□□□ -1.12
MSX1P28360 AC093524.1-201ENST00000564266 1094 ntBASIC8.08□□□□□ -1.12
MSX1P28360 RN7SL474P-201ENST00000583485 301 ntBASIC8.08□□□□□ -1.12
MSX1P28360 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC8.08□□□□□ -1.12
MSX1P28360 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC8.08□□□□□ -1.12
MSX1P28360 AC008649.2-201ENST00000585999 242 ntTSL 5 BASIC8.08□□□□□ -1.12
MSX1P28360 AL161725.1-211ENST00000592805 889 ntTSL 5 BASIC8.08□□□□□ -1.12
MSX1P28360 AC008734.1-201ENST00000594006 537 ntTSL 2 BASIC8.08□□□□□ -1.12
MSX1P28360 AL121830.1-203ENST00000598694 701 ntTSL 5 BASIC8.08□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms