Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19.2■□□□□ 0.66
VPS29Q9UBQ0 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS29Q9UBQ0 PARL-206ENST00000435888 1098 ntTSL 5 BASIC19.2■□□□□ 0.66
VPS29Q9UBQ0 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC19.2■□□□□ 0.66
VPS29Q9UBQ0 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.2■□□□□ 0.66
VPS29Q9UBQ0 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC19.2■□□□□ 0.66
VPS29Q9UBQ0 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS29Q9UBQ0 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS29Q9UBQ0 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS29Q9UBQ0 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
VPS29Q9UBQ0 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.19■□□□□ 0.66
VPS29Q9UBQ0 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS29Q9UBQ0 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
VPS29Q9UBQ0 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.19■□□□□ 0.66
VPS29Q9UBQ0 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS29Q9UBQ0 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS29Q9UBQ0 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
VPS29Q9UBQ0 KRT8P17-201ENST00000453110 1448 ntBASIC19.19■□□□□ 0.66
VPS29Q9UBQ0 TMEM179-206ENST00000616017 1645 ntBASIC19.19■□□□□ 0.66
VPS29Q9UBQ0 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS29Q9UBQ0 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.19■□□□□ 0.66
VPS29Q9UBQ0 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS29Q9UBQ0 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS29Q9UBQ0 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS29Q9UBQ0 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VPS29Q9UBQ0 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
VPS29Q9UBQ0 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC19.19■□□□□ 0.66
VPS29Q9UBQ0 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.19■□□□□ 0.66
VPS29Q9UBQ0 AC080038.1-201ENST00000611274 1154 ntBASIC19.19■□□□□ 0.66
VPS29Q9UBQ0 AL589743.5-201ENST00000616611 1050 ntBASIC19.19■□□□□ 0.66
VPS29Q9UBQ0 AC092437.1-201ENST00000624794 1048 ntBASIC19.19■□□□□ 0.66
VPS29Q9UBQ0 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.19■□□□□ 0.66
VPS29Q9UBQ0 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS29Q9UBQ0 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.19■□□□□ 0.66
VPS29Q9UBQ0 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS29Q9UBQ0 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VPS29Q9UBQ0 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS29Q9UBQ0 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.19■□□□□ 0.66
VPS29Q9UBQ0 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS29Q9UBQ0 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
VPS29Q9UBQ0 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VPS29Q9UBQ0 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.19■□□□□ 0.66
VPS29Q9UBQ0 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS29Q9UBQ0 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.19■□□□□ 0.66
VPS29Q9UBQ0 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS29Q9UBQ0 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.18■□□□□ 0.66
VPS29Q9UBQ0 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.18■□□□□ 0.66
VPS29Q9UBQ0 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS29Q9UBQ0 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS29Q9UBQ0 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS29Q9UBQ0 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS29Q9UBQ0 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS29Q9UBQ0 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS29Q9UBQ0 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS29Q9UBQ0 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS29Q9UBQ0 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS29Q9UBQ0 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.18■□□□□ 0.66
VPS29Q9UBQ0 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS29Q9UBQ0 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS29Q9UBQ0 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS29Q9UBQ0 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS29Q9UBQ0 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
VPS29Q9UBQ0 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VPS29Q9UBQ0 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
VPS29Q9UBQ0 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS29Q9UBQ0 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
VPS29Q9UBQ0 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS29Q9UBQ0 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS29Q9UBQ0 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.17■□□□□ 0.66
VPS29Q9UBQ0 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS29Q9UBQ0 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS29Q9UBQ0 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS29Q9UBQ0 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VPS29Q9UBQ0 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.17■□□□□ 0.66
VPS29Q9UBQ0 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS29Q9UBQ0 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.17■□□□□ 0.66
VPS29Q9UBQ0 AC093787.1-201ENST00000450396 207 ntBASIC19.17■□□□□ 0.66
VPS29Q9UBQ0 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VPS29Q9UBQ0 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.17■□□□□ 0.66
VPS29Q9UBQ0 IKBKGP1-201ENST00000612193 1073 ntBASIC19.17■□□□□ 0.66
VPS29Q9UBQ0 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VPS29Q9UBQ0 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VPS29Q9UBQ0 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS29Q9UBQ0 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS29Q9UBQ0 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS29Q9UBQ0 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS29Q9UBQ0 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.16■□□□□ 0.66
VPS29Q9UBQ0 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS29Q9UBQ0 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS29Q9UBQ0 MIR935-201ENST00000401179 91 ntBASIC19.16■□□□□ 0.66
VPS29Q9UBQ0 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC19.16■□□□□ 0.66
VPS29Q9UBQ0 GLI3-203ENST00000437480 451 ntTSL 2 BASIC19.16■□□□□ 0.66
VPS29Q9UBQ0 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS29Q9UBQ0 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.16■□□□□ 0.66
VPS29Q9UBQ0 AC133552.2-202ENST00000575694 574 ntBASIC19.16■□□□□ 0.66
VPS29Q9UBQ0 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
VPS29Q9UBQ0 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC19.16■□□□□ 0.66
VPS29Q9UBQ0 AL031963.3-201ENST00000606441 850 ntBASIC19.16■□□□□ 0.66
VPS29Q9UBQ0 AC073111.5-205ENST00000641717 521 ntBASIC19.16■□□□□ 0.66
VPS29Q9UBQ0 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms