Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 VPS53-216ENST00000574029 585 ntTSL 4 BASIC20.34■□□□□ 0.85
LRRC40Q9H9A6 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.34■□□□□ 0.85
LRRC40Q9H9A6 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.34■□□□□ 0.85
LRRC40Q9H9A6 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC20.34■□□□□ 0.85
LRRC40Q9H9A6 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC20.34■□□□□ 0.85
LRRC40Q9H9A6 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
LRRC40Q9H9A6 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LRRC40Q9H9A6 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.33■□□□□ 0.85
LRRC40Q9H9A6 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC20.33■□□□□ 0.85
LRRC40Q9H9A6 AC026185.1-201ENST00000445748 174 ntBASIC20.33■□□□□ 0.85
LRRC40Q9H9A6 ISCU-212ENST00000547005 795 ntTSL 3 BASIC20.33■□□□□ 0.85
LRRC40Q9H9A6 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20.33■□□□□ 0.85
LRRC40Q9H9A6 BRWD1-AS2-201ENST00000603064 1028 ntBASIC20.33■□□□□ 0.85
LRRC40Q9H9A6 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
LRRC40Q9H9A6 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.84
LRRC40Q9H9A6 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
LRRC40Q9H9A6 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
LRRC40Q9H9A6 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
LRRC40Q9H9A6 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
LRRC40Q9H9A6 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
LRRC40Q9H9A6 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
LRRC40Q9H9A6 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
LRRC40Q9H9A6 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRRC40Q9H9A6 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.32■□□□□ 0.84
LRRC40Q9H9A6 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRRC40Q9H9A6 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRRC40Q9H9A6 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRRC40Q9H9A6 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRRC40Q9H9A6 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
LRRC40Q9H9A6 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.32■□□□□ 0.84
LRRC40Q9H9A6 DLX3-202ENST00000512495 834 ntTSL 2 BASIC20.32■□□□□ 0.84
LRRC40Q9H9A6 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC20.32■□□□□ 0.84
LRRC40Q9H9A6 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.32■□□□□ 0.84
LRRC40Q9H9A6 KRT8P17-201ENST00000453110 1448 ntBASIC20.32■□□□□ 0.84
LRRC40Q9H9A6 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
LRRC40Q9H9A6 AL691432.2-201ENST00000607222 2038 ntBASIC20.32■□□□□ 0.84
LRRC40Q9H9A6 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRRC40Q9H9A6 KRT17P1-201ENST00000399211 1546 ntBASIC20.32■□□□□ 0.84
LRRC40Q9H9A6 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC20.32■□□□□ 0.84
LRRC40Q9H9A6 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRRC40Q9H9A6 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
LRRC40Q9H9A6 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LRRC40Q9H9A6 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC20.31■□□□□ 0.84
LRRC40Q9H9A6 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LRRC40Q9H9A6 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LRRC40Q9H9A6 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LRRC40Q9H9A6 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LRRC40Q9H9A6 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LRRC40Q9H9A6 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
LRRC40Q9H9A6 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
LRRC40Q9H9A6 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.31■□□□□ 0.84
LRRC40Q9H9A6 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LRRC40Q9H9A6 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.31■□□□□ 0.84
LRRC40Q9H9A6 AL031963.3-201ENST00000606441 850 ntBASIC20.31■□□□□ 0.84
LRRC40Q9H9A6 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.31■□□□□ 0.84
LRRC40Q9H9A6 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC20.31■□□□□ 0.84
LRRC40Q9H9A6 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
LRRC40Q9H9A6 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.3■□□□□ 0.84
LRRC40Q9H9A6 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.3■□□□□ 0.84
LRRC40Q9H9A6 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.3■□□□□ 0.84
LRRC40Q9H9A6 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LRRC40Q9H9A6 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRRC40Q9H9A6 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRRC40Q9H9A6 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
LRRC40Q9H9A6 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LRRC40Q9H9A6 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRRC40Q9H9A6 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRRC40Q9H9A6 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRRC40Q9H9A6 MIR663A-201ENST00000385250 93 ntBASIC20.3■□□□□ 0.84
LRRC40Q9H9A6 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC20.3■□□□□ 0.84
LRRC40Q9H9A6 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.3■□□□□ 0.84
LRRC40Q9H9A6 AF201337.1-201ENST00000520239 748 ntBASIC20.3■□□□□ 0.84
LRRC40Q9H9A6 C2orf69P4-201ENST00000565394 541 ntBASIC20.3■□□□□ 0.84
LRRC40Q9H9A6 RAP2CP1-201ENST00000605103 478 ntBASIC20.3■□□□□ 0.84
LRRC40Q9H9A6 AL050303.2-201ENST00000619798 666 ntBASIC20.3■□□□□ 0.84
LRRC40Q9H9A6 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRRC40Q9H9A6 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.3■□□□□ 0.84
LRRC40Q9H9A6 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRRC40Q9H9A6 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRRC40Q9H9A6 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRRC40Q9H9A6 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRRC40Q9H9A6 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.3■□□□□ 0.84
LRRC40Q9H9A6 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LRRC40Q9H9A6 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
LRRC40Q9H9A6 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
LRRC40Q9H9A6 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LRRC40Q9H9A6 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LRRC40Q9H9A6 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LRRC40Q9H9A6 KRT8P20-201ENST00000423953 1409 ntBASIC20.29■□□□□ 0.84
LRRC40Q9H9A6 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.29■□□□□ 0.84
LRRC40Q9H9A6 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LRRC40Q9H9A6 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LRRC40Q9H9A6 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LRRC40Q9H9A6 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LRRC40Q9H9A6 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.29■□□□□ 0.84
LRRC40Q9H9A6 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.29■□□□□ 0.84
LRRC40Q9H9A6 AC105036.2-201ENST00000569468 176 ntBASIC20.29■□□□□ 0.84
LRRC40Q9H9A6 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LRRC40Q9H9A6 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC20.29■□□□□ 0.84
LRRC40Q9H9A6 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms