Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC19.24■□□□□ 0.67
COL28A1Q2UY09 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC19.24■□□□□ 0.67
COL28A1Q2UY09 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL28A1Q2UY09 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC19.24■□□□□ 0.67
COL28A1Q2UY09 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL28A1Q2UY09 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC19.24■□□□□ 0.67
COL28A1Q2UY09 DUT-205ENST00000558813 769 ntTSL 2 BASIC19.24■□□□□ 0.67
COL28A1Q2UY09 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
COL28A1Q2UY09 METTL23-204ENST00000586752 904 ntTSL 2 BASIC19.24■□□□□ 0.67
COL28A1Q2UY09 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL28A1Q2UY09 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC19.24■□□□□ 0.67
COL28A1Q2UY09 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL28A1Q2UY09 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
COL28A1Q2UY09 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL28A1Q2UY09 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC19.24■□□□□ 0.67
COL28A1Q2UY09 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL28A1Q2UY09 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL28A1Q2UY09 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL28A1Q2UY09 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
COL28A1Q2UY09 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL28A1Q2UY09 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL28A1Q2UY09 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL28A1Q2UY09 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL28A1Q2UY09 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL28A1Q2UY09 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC19.23■□□□□ 0.67
COL28A1Q2UY09 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.23■□□□□ 0.67
COL28A1Q2UY09 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL28A1Q2UY09 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC19.23■□□□□ 0.67
COL28A1Q2UY09 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
COL28A1Q2UY09 GGT1-206ENST00000404223 952 ntTSL 2 BASIC19.23■□□□□ 0.67
COL28A1Q2UY09 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC19.23■□□□□ 0.67
COL28A1Q2UY09 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.23■□□□□ 0.67
COL28A1Q2UY09 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC19.23■□□□□ 0.67
COL28A1Q2UY09 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC19.23■□□□□ 0.67
COL28A1Q2UY09 KRT126P-201ENST00000549467 1181 ntBASIC19.23■□□□□ 0.67
COL28A1Q2UY09 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC19.23■□□□□ 0.67
COL28A1Q2UY09 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC19.23■□□□□ 0.67
COL28A1Q2UY09 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.23■□□□□ 0.67
COL28A1Q2UY09 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.23■□□□□ 0.67
COL28A1Q2UY09 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL28A1Q2UY09 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL28A1Q2UY09 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.23■□□□□ 0.67
COL28A1Q2UY09 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL28A1Q2UY09 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
COL28A1Q2UY09 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL28A1Q2UY09 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.22■□□□□ 0.67
COL28A1Q2UY09 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL28A1Q2UY09 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL28A1Q2UY09 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL28A1Q2UY09 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL28A1Q2UY09 NARF-205ENST00000412079 1760 ntTSL 5 BASIC19.22■□□□□ 0.67
COL28A1Q2UY09 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL28A1Q2UY09 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL28A1Q2UY09 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL28A1Q2UY09 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL28A1Q2UY09 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
COL28A1Q2UY09 AC104076.2-201ENST00000448912 469 ntBASIC19.22■□□□□ 0.67
COL28A1Q2UY09 NMU-205ENST00000511469 756 ntTSL 3 BASIC19.22■□□□□ 0.67
COL28A1Q2UY09 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC19.22■□□□□ 0.67
COL28A1Q2UY09 TOLLIP-AS1-201ENST00000530897 939 ntBASIC19.22■□□□□ 0.67
COL28A1Q2UY09 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC19.22■□□□□ 0.67
COL28A1Q2UY09 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC19.22■□□□□ 0.67
COL28A1Q2UY09 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC19.22■□□□□ 0.67
COL28A1Q2UY09 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL28A1Q2UY09 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL28A1Q2UY09 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL28A1Q2UY09 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL28A1Q2UY09 Z98882.1-201ENST00000622160 2253 ntBASIC19.22■□□□□ 0.67
COL28A1Q2UY09 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL28A1Q2UY09 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
COL28A1Q2UY09 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
COL28A1Q2UY09 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL28A1Q2UY09 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL28A1Q2UY09 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL28A1Q2UY09 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.21■□□□□ 0.67
COL28A1Q2UY09 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL28A1Q2UY09 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL28A1Q2UY09 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL28A1Q2UY09 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL28A1Q2UY09 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL28A1Q2UY09 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
COL28A1Q2UY09 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC19.21■□□□□ 0.67
COL28A1Q2UY09 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC19.21■□□□□ 0.67
COL28A1Q2UY09 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL28A1Q2UY09 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC19.21■□□□□ 0.67
COL28A1Q2UY09 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC19.21■□□□□ 0.67
COL28A1Q2UY09 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL28A1Q2UY09 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
COL28A1Q2UY09 AC006557.6-201ENST00000623071 864 ntBASIC19.21■□□□□ 0.67
COL28A1Q2UY09 DECR2-212ENST00000627716 352 ntTSL 2 BASIC19.21■□□□□ 0.67
COL28A1Q2UY09 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL28A1Q2UY09 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
COL28A1Q2UY09 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.21■□□□□ 0.67
COL28A1Q2UY09 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL28A1Q2UY09 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL28A1Q2UY09 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
COL28A1Q2UY09 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL28A1Q2UY09 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL28A1Q2UY09 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC19.2■□□□□ 0.66
COL28A1Q2UY09 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms