Protein–RNA interactions for Protein: Q06406

LSM6, U6 snRNA-associated Sm-like protein LSm6, yeast

Known RBP Predictions only

Length 86 aa.

Protein		RNA				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	UniProt Accession	Gene	Ensembl Transcript ID	Length	Transcript Status	Prediction Score	Prediction z-Score	Detected Interaction
LSM6	Q06406	YGL230C	YGL230C	444 nt		-0.81	□□□□□ -2.54
LSM6	Q06406	QCR9	YGR183C	201 nt		-0.81	□□□□□ -2.54
LSM6	Q06406	TAR1	YLR154W-C	375 nt		-0.81	□□□□□ -2.54
LSM6	Q06406	YLR412C-A	YLR412C-A	207 nt		-0.81	□□□□□ -2.54
LSM6	Q06406	CSE1	YGL238W	2883 nt		-0.82	□□□□□ -2.54
LSM6	Q06406	PCF11	YDR228C	1881 nt		-0.84	□□□□□ -2.54
LSM6	Q06406	YER175W-A	YER175W-A	165 nt		-0.84	□□□□□ -2.54
LSM6	Q06406	YNL058C	YNL058C	951 nt		-0.85	□□□□□ -2.55
LSM6	Q06406	YHL041W	YHL041W	450 nt		-0.86	□□□□□ -2.55
LSM6	Q06406	YIR021W-A	YIR021W-A	213 nt		-0.86	□□□□□ -2.55
LSM6	Q06406	YBR099C	YBR099C	384 nt		-0.86	□□□□□ -2.55
LSM6	Q06406	UTP8	YGR128C	2142 nt		-0.87	□□□□□ -2.55
LSM6	Q06406	YLR287C	YLR287C	1068 nt		-0.87	□□□□□ -2.55
LSM6	Q06406	YOR032W-A	YOR032W-A	201 nt		-0.88	□□□□□ -2.55
LSM6	Q06406	TSC3	YBR058C-A	243 nt		-0.88	□□□□□ -2.55
LSM6	Q06406	EST1	YLR233C	2100 nt		-0.89	□□□□□ -2.55
LSM6	Q06406	YJL020W-A	YJL020W-A	258 nt		-0.89	□□□□□ -2.55
LSM6	Q06406	YJR087W	YJR087W	351 nt		-0.89	□□□□□ -2.55
LSM6	Q06406	RPM2	YML091C	3609 nt		-0.89	□□□□□ -2.55
LSM6	Q06406	HMLALPHA2	YCL067C	633 nt		-0.9	□□□□□ -2.55
LSM6	Q06406	MATALPHA2	YCR039C	633 nt		-0.9	□□□□□ -2.55
LSM6	Q06406	HMRA2	YCR096C	360 nt		-0.9	□□□□□ -2.55
LSM6	Q06406	YIL029C	YIL029C	429 nt		-0.9	□□□□□ -2.55
LSM6	Q06406	YKL044W	YKL044W	321 nt		-0.9	□□□□□ -2.55
LSM6	Q06406	YLR282C	YLR282C	342 nt		-0.9	□□□□□ -2.55
LSM6	Q06406	YHR138C	YHR138C	345 nt		-0.91	□□□□□ -2.56
LSM6	Q06406	YNL067W-B	YNL067W-B	141 nt		-0.91	□□□□□ -2.56
LSM6	Q06406	ZEO1	YOL109W	342 nt		-0.91	□□□□□ -2.56
LSM6	Q06406	YIL071W-A	YIL071W-A	477 nt		-0.92	□□□□□ -2.56
LSM6	Q06406	BLI1	YKL061W	342 nt		-0.93	□□□□□ -2.56
LSM6	Q06406	FYV7	YLR068W	456 nt		-0.93	□□□□□ -2.56
LSM6	Q06406	YDL011C	YDL011C	324 nt		-0.95	□□□□□ -2.56
LSM6	Q06406	YMR158W-B	YMR158W-B	321 nt		-0.95	□□□□□ -2.56
LSM6	Q06406	YPR002C-A	YPR002C-A	198 nt		-0.95	□□□□□ -2.56
LSM6	Q06406	YBR072C-A	YBR072C-A	162 nt		-0.95	□□□□□ -2.56
LSM6	Q06406	YCR100C	YCR100C	951 nt		-0.96	□□□□□ -2.56
LSM6	Q06406	YDL007C-A	YDL007C-A	258 nt		-0.96	□□□□□ -2.56
LSM6	Q06406	SNU13	YEL026W	381 nt		-0.96	□□□□□ -2.56
LSM6	Q06406	tT(UGU)G1	tT(UGU)G1	72 nt		-0.96	□□□□□ -2.56
LSM6	Q06406	tT(UGU)G2	tT(UGU)G2	72 nt		-0.96	□□□□□ -2.56
LSM6	Q06406	tT(UGU)P	tT(UGU)P	72 nt		-0.96	□□□□□ -2.56
LSM6	Q06406	MRPS8	YMR158W	468 nt		-0.96	□□□□□ -2.56
LSM6	Q06406	YPL229W	YPL229W	621 nt		-0.96	□□□□□ -2.56
LSM6	Q06406	snR33	snR33	183 nt		-0.96	□□□□□ -2.56
LSM6	Q06406	YDL016C	YDL016C	303 nt		-0.97	□□□□□ -2.56
LSM6	Q06406	YJL120W	YJL120W	324 nt		-0.97	□□□□□ -2.56
LSM6	Q06406	YLR041W	YLR041W	321 nt		-0.98	□□□□□ -2.57
LSM6	Q06406	RPS25B	YLR333C	327 nt		-0.99	□□□□□ -2.57
LSM6	Q06406	YLR334C	YLR334C	381 nt		-1	□□□□□ -2.57
LSM6	Q06406	YNL303W	YNL303W	348 nt		-1	□□□□□ -2.57
LSM6	Q06406	YML007C-A	YML007C-A	111 nt		-1.01	□□□□□ -2.57
LSM6	Q06406	YBL071C	YBL071C	309 nt		-1.01	□□□□□ -2.57
LSM6	Q06406	YKL083W	YKL083W	615 nt		-1.03	□□□□□ -2.57
LSM6	Q06406	YOR161W-A	YOR161W-A	81 nt		-1.03	□□□□□ -2.57
LSM6	Q06406	tA(UGC)Q	tA(UGC)Q	76 nt		-1.04	□□□□□ -2.58
LSM6	Q06406	YPL068C	YPL068C	882 nt		-1.04	□□□□□ -2.58
LSM6	Q06406	YDR426C	YDR426C	378 nt		-1.05	□□□□□ -2.58
LSM6	Q06406	YDR354C-A	YDR354C-A	144 nt		-1.06	□□□□□ -2.58
LSM6	Q06406	YDR366C	YDR366C	399 nt		-1.06	□□□□□ -2.58
LSM6	Q06406	YHR007C-A	YHR007C-A	216 nt		-1.06	□□□□□ -2.58
LSM6	Q06406	ISF1	YMR081C	1017 nt		-1.06	□□□□□ -2.58
LSM6	Q06406	GRX5	YPL059W	453 nt		-1.06	□□□□□ -2.58
LSM6	Q06406	AGA2	YGL032C	264 nt		-1.09	□□□□□ -2.58
LSM6	Q06406	YLR269C	YLR269C	351 nt		-1.09	□□□□□ -2.58
LSM6	Q06406	YJL026C-A	YJL026C-A	222 nt		-1.11	□□□□□ -2.59
LSM6	Q06406	YJL113W	YJL113W	4647 nt		-1.11	□□□□□ -2.59
LSM6	Q06406	YER079W	YER079W	633 nt		-1.12	□□□□□ -2.59
LSM6	Q06406	YGL123C-A	YGL123C-A	231 nt		-1.12	□□□□□ -2.59
LSM6	Q06406	snR36	snR36	182 nt		-1.12	□□□□□ -2.59
LSM6	Q06406	GLG1	YKR058W	1851 nt		-1.13	□□□□□ -2.59
LSM6	Q06406	YGR174W-A	YGR174W-A	87 nt		-1.14	□□□□□ -2.59
LSM6	Q06406	YLR264C-A	YLR264C-A	117 nt		-1.14	□□□□□ -2.59
LSM6	Q06406	PAU9	YBL108C-A	129 nt		-1.14	□□□□□ -2.59
LSM6	Q06406	YHL009W-B	YHL009W-B	5409 nt		-1.14	□□□□□ -2.59
LSM6	Q06406	PCC1	YKR095W-A	267 nt		-1.15	□□□□□ -2.59
LSM6	Q06406	YKL100W-A	YKL100W-A	90 nt		-1.18	□□□□□ -2.6
LSM6	Q06406	YML100W-A	YML100W-A	174 nt		-1.18	□□□□□ -2.6
LSM6	Q06406	SDH6	YDR379C-A	240 nt		-1.19	□□□□□ -2.6
LSM6	Q06406	YHR130C	YHR130C	336 nt		-1.19	□□□□□ -2.6
LSM6	Q06406	YEL020C-B	YEL020C-B	198 nt		-1.2	□□□□□ -2.6
LSM6	Q06406	YAL066W	YAL066W	309 nt		-1.2	□□□□□ -2.6
LSM6	Q06406	YAR047C	YAR047C	321 nt		-1.2	□□□□□ -2.6
LSM6	Q06406	YOR192C-C	YOR192C-C	237 nt		-1.2	□□□□□ -2.6
LSM6	Q06406	COG6	YNL041C	2520 nt		-1.2	□□□□□ -2.6
LSM6	Q06406	YLR456W	YLR456W	615 nt		-1.21	□□□□□ -2.6
LSM6	Q06406	YFR009W-A	YFR009W-A	258 nt		-1.22	□□□□□ -2.6
LSM6	Q06406	YAR029W	YAR029W	225 nt		-1.22	□□□□□ -2.6
LSM6	Q06406	snR161	snR161	161 nt		-1.22	□□□□□ -2.6
LSM6	Q06406	AIM29	YKR074W	468 nt		-1.23	□□□□□ -2.61
LSM6	Q06406	GPI15	YNL038W	690 nt		-1.23	□□□□□ -2.61
LSM6	Q06406	YFL012W	YFL012W	447 nt		-1.24	□□□□□ -2.61
LSM6	Q06406	YOL038C-A	YOL038C-A	96 nt		-1.25	□□□□□ -2.61
LSM6	Q06406	YIL002W-A	YIL002W-A	210 nt		-1.26	□□□□□ -2.61
LSM6	Q06406	YJL182C	YJL182C	318 nt		-1.26	□□□□□ -2.61
LSM6	Q06406	CBS1	YDL069C	690 nt		-1.3	□□□□□ -2.62
LSM6	Q06406	YFL063W	YFL063W	456 nt		-1.3	□□□□□ -2.62
LSM6	Q06406	PRM3	YPL192C	402 nt		-1.3	□□□□□ -2.62
LSM6	Q06406	YHR125W	YHR125W	306 nt		-1.31	□□□□□ -2.62
LSM6	Q06406	YER084W-A	YER084W-A	513 nt		-1.32	□□□□□ -2.62
LSM6	Q06406	YPL060C-A	YPL060C-A	3315 nt		-1.33	□□□□□ -2.62

Retrieved 100 of 7,029 protein–RNA pairs in 48.8 ms