Protein–RNA interactions for Protein: P40089

LSM5, U6 snRNA-associated Sm-like protein LSm5, yeastyeast

Known RBP Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
LSM5P40089 SEC1YDR164C 2175 nt0.81□□□□□ -2.28
LSM5P40089 BUD3YCL014W 4911 nt0.81□□□□□ -2.28
LSM5P40089 HTL1YCR020W-B 237 nt0.8□□□□□ -2.28
LSM5P40089 GIM4YEL003W 336 nt0.8□□□□□ -2.28
LSM5P40089 YGL149WYGL149W 306 nt0.8□□□□□ -2.28
LSM5P40089 YHR175W-AYHR175W-A 150 nt0.8□□□□□ -2.28
LSM5P40089 YIL115W-AYIL115W-A 372 nt0.8□□□□□ -2.28
LSM5P40089 YPR159C-AYPR159C-A 102 nt0.8□□□□□ -2.28
LSM5P40089 RKR1YMR247C 4689 nt0.79□□□□□ -2.28
LSM5P40089 snR56snR56 88 nt0.79□□□□□ -2.28
LSM5P40089 HMRA1YCR097W 381 nt0.79□□□□□ -2.28
LSM5P40089 snR36snR36 182 nt0.79□□□□□ -2.28
LSM5P40089 snR60snR60 104 nt0.78□□□□□ -2.28
LSM5P40089 INA22YIR024C 651 nt0.78□□□□□ -2.28
LSM5P40089 COG8YML071C 1824 nt0.78□□□□□ -2.29
LSM5P40089 VIK1YPL253C 1944 nt0.77□□□□□ -2.29
LSM5P40089 YDR183C-AYDR183C-A 258 nt0.77□□□□□ -2.29
LSM5P40089 YIL032CYIL032C 357 nt0.77□□□□□ -2.29
LSM5P40089 SEC8YPR055W 3198 nt0.77□□□□□ -2.29
LSM5P40089 YIL142C-AYIL142C-A 333 nt0.75□□□□□ -2.29
LSM5P40089 LTE1YAL024C 4308 nt0.75□□□□□ -2.29
LSM5P40089 DOP1YDR141C 5097 nt0.74□□□□□ -2.29
LSM5P40089 CHS6YJL099W 2241 nt0.73□□□□□ -2.29
LSM5P40089 YCR018C-AYCR018C-A 255 nt0.73□□□□□ -2.29
LSM5P40089 ATP6Q0085 780 nt0.73□□□□□ -2.29
LSM5P40089 YMR193C-AYMR193C-A 387 nt0.73□□□□□ -2.29
LSM5P40089 YDL073WYDL073W 2955 nt0.73□□□□□ -2.29
LSM5P40089 YML002WYML002W 2214 nt0.72□□□□□ -2.29
LSM5P40089 YFR012W-AYFR012W-A 87 nt0.72□□□□□ -2.29
LSM5P40089 PRP16YKR086W 3216 nt0.71□□□□□ -2.3
LSM5P40089 YAL067W-AYAL067W-A 228 nt0.71□□□□□ -2.3
LSM5P40089 YLR399W-AYLR399W-A 105 nt0.71□□□□□ -2.3
LSM5P40089 COX5BYIL111W 456 nt0.7□□□□□ -2.3
LSM5P40089 YKL118WYKL118W 312 nt0.7□□□□□ -2.3
LSM5P40089 YMR307C-AYMR307C-A 195 nt0.7□□□□□ -2.3
LSM5P40089 YFL032WYFL032W 321 nt0.69□□□□□ -2.3
LSM5P40089 YFL063WYFL063W 456 nt0.69□□□□□ -2.3
LSM5P40089 RPL39YJL189W 156 nt0.69□□□□□ -2.3
LSM5P40089 YKL136WYKL136W 399 nt0.69□□□□□ -2.3
LSM5P40089 YMR031W-AYMR031W-A 327 nt0.68□□□□□ -2.3
LSM5P40089 YNL028WYNL028W 318 nt0.68□□□□□ -2.3
LSM5P40089 snR190snR190 190 nt0.68□□□□□ -2.3
LSM5P40089 YPR160W-AYPR160W-A 81 nt0.68□□□□□ -2.3
LSM5P40089 UBP3YER151C 2739 nt0.67□□□□□ -2.3
LSM5P40089 YDR354C-AYDR354C-A 144 nt0.67□□□□□ -2.3
LSM5P40089 tF(GAA)BtF(GAA)B 73 nt0.67□□□□□ -2.3
LSM5P40089 tF(GAA)FtF(GAA)F 73 nt0.67□□□□□ -2.3
LSM5P40089 tF(GAA)GtF(GAA)G 73 nt0.67□□□□□ -2.3
LSM5P40089 tF(GAA)H1tF(GAA)H1 73 nt0.67□□□□□ -2.3
LSM5P40089 tF(GAA)H2tF(GAA)H2 73 nt0.67□□□□□ -2.3
LSM5P40089 tF(GAA)MtF(GAA)M 73 nt0.67□□□□□ -2.3
LSM5P40089 tF(GAA)P1tF(GAA)P1 73 nt0.67□□□□□ -2.3
LSM5P40089 tF(GAA)P2tF(GAA)P2 73 nt0.67□□□□□ -2.3
LSM5P40089 tR(ACG)Q2tR(ACG)Q2 74 nt0.67□□□□□ -2.3
LSM5P40089 YDR413CYDR413C 576 nt0.66□□□□□ -2.3
LSM5P40089 FYV10YIL097W 1551 nt0.66□□□□□ -2.3
LSM5P40089 ASE1YOR058C 2658 nt0.65□□□□□ -2.3
LSM5P40089 tT(AGU)BtT(AGU)B 73 nt0.65□□□□□ -2.31
LSM5P40089 tT(AGU)CtT(AGU)C 73 nt0.65□□□□□ -2.31
LSM5P40089 tT(AGU)DtT(AGU)D 73 nt0.65□□□□□ -2.31
LSM5P40089 tT(AGU)HtT(AGU)H 73 nt0.65□□□□□ -2.31
LSM5P40089 tT(AGU)I1tT(AGU)I1 73 nt0.65□□□□□ -2.31
LSM5P40089 tT(AGU)I2tT(AGU)I2 73 nt0.65□□□□□ -2.31
LSM5P40089 tT(AGU)JtT(AGU)J 73 nt0.65□□□□□ -2.31
LSM5P40089 tT(AGU)N1tT(AGU)N1 73 nt0.65□□□□□ -2.31
LSM5P40089 tT(AGU)N2tT(AGU)N2 73 nt0.65□□□□□ -2.31
LSM5P40089 tT(AGU)O1tT(AGU)O1 73 nt0.65□□□□□ -2.31
LSM5P40089 tT(AGU)O2tT(AGU)O2 73 nt0.65□□□□□ -2.31
LSM5P40089 YJL127W-AYJL127W-A 117 nt0.64□□□□□ -2.31
LSM5P40089 YMR272W-AYMR272W-A 114 nt0.64□□□□□ -2.31
LSM5P40089 YDL185C-AYDL185C-A 228 nt0.63□□□□□ -2.31
LSM5P40089 YIL134C-AYIL134C-A 204 nt0.63□□□□□ -2.31
LSM5P40089 YJL197C-AYJL197C-A 282 nt0.63□□□□□ -2.31
LSM5P40089 YMR160WYMR160W 2451 nt0.63□□□□□ -2.31
LSM5P40089 UTP10YJL109C 5310 nt0.63□□□□□ -2.31
LSM5P40089 YEL020C-BYEL020C-B 198 nt0.62□□□□□ -2.31
LSM5P40089 YJL026C-AYJL026C-A 222 nt0.61□□□□□ -2.31
LSM5P40089 PET111YMR257C 2403 nt0.61□□□□□ -2.31
LSM5P40089 STE5YDR103W 2754 nt0.61□□□□□ -2.31
LSM5P40089 YOR072W-BYOR072W-B 162 nt0.6□□□□□ -2.31
LSM5P40089 YER097WYER097W 330 nt0.59□□□□□ -2.31
LSM5P40089 YKL100W-AYKL100W-A 90 nt0.59□□□□□ -2.31
LSM5P40089 YKL145W-AYKL145W-A 93 nt0.59□□□□□ -2.31
LSM5P40089 YLR282CYLR282C 342 nt0.59□□□□□ -2.31
LSM5P40089 MLP1YKR095W 5628 nt0.58□□□□□ -2.32
LSM5P40089 PRP42YDR235W 1635 nt0.58□□□□□ -2.32
LSM5P40089 OST4YDL232W 111 nt0.58□□□□□ -2.32
LSM5P40089 QCR9YGR183C 201 nt0.58□□□□□ -2.32
LSM5P40089 PAU12YGR294W 363 nt0.58□□□□□ -2.32
LSM5P40089 PRP5YBR237W 2550 nt0.58□□□□□ -2.32
LSM5P40089 HAL9YOL089C 3093 nt0.57□□□□□ -2.32
LSM5P40089 BLI1YKL061W 342 nt0.57□□□□□ -2.32
LSM5P40089 YLL019W-AYLL019W-A 93 nt0.57□□□□□ -2.32
LSM5P40089 COY1YKL179C 2040 nt0.57□□□□□ -2.32
LSM5P40089 BEM3YPL115C 3387 nt0.56□□□□□ -2.32
LSM5P40089 YGL123C-AYGL123C-A 231 nt0.54□□□□□ -2.32
LSM5P40089 RAD61YDR014W 1944 nt0.53□□□□□ -2.32
LSM5P40089 YOL014WYOL014W 375 nt0.52□□□□□ -2.33
LSM5P40089 YLR120W-AYLR120W-A 102 nt0.51□□□□□ -2.33
LSM5P40089 YOR008C-AYOR008C-A 225 nt0.51□□□□□ -2.33
Retrieved 100 of 7,029 protein–RNA pairs in 37.1 ms