Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
FOXN3O00409 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
FOXN3O00409 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC21.46■■□□□ 1.03
FOXN3O00409 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC21.46■■□□□ 1.03
FOXN3O00409 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
FOXN3O00409 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
FOXN3O00409 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
FOXN3O00409 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
FOXN3O00409 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC21.46■■□□□ 1.03
FOXN3O00409 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC21.46■■□□□ 1.03
FOXN3O00409 PHB2-213ENST00000546111 858 ntTSL 2 BASIC21.46■■□□□ 1.03
FOXN3O00409 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC21.46■■□□□ 1.03
FOXN3O00409 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
FOXN3O00409 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
FOXN3O00409 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
FOXN3O00409 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
FOXN3O00409 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
FOXN3O00409 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
FOXN3O00409 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
FOXN3O00409 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
FOXN3O00409 MOK-225ENST00000522867 1883 ntTSL 5 BASIC21.45■■□□□ 1.02
FOXN3O00409 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
FOXN3O00409 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
FOXN3O00409 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
FOXN3O00409 LSM12P1-201ENST00000411836 588 ntBASIC21.45■■□□□ 1.02
FOXN3O00409 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC21.45■■□□□ 1.02
FOXN3O00409 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC21.45■■□□□ 1.02
FOXN3O00409 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
FOXN3O00409 OAS3-207ENST00000551007 998 ntTSL 2 BASIC21.45■■□□□ 1.02
FOXN3O00409 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
FOXN3O00409 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
FOXN3O00409 NXN-202ENST00000537628 1340 ntTSL 3 BASIC21.45■■□□□ 1.02
FOXN3O00409 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
FOXN3O00409 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.45■■□□□ 1.02
FOXN3O00409 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
FOXN3O00409 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
FOXN3O00409 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC21.44■■□□□ 1.02
FOXN3O00409 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
FOXN3O00409 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
FOXN3O00409 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
FOXN3O00409 BX276092.2-201ENST00000417668 665 ntBASIC21.44■■□□□ 1.02
FOXN3O00409 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC21.44■■□□□ 1.02
FOXN3O00409 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
FOXN3O00409 AL031963.3-201ENST00000606441 850 ntBASIC21.44■■□□□ 1.02
FOXN3O00409 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC21.44■■□□□ 1.02
FOXN3O00409 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
FOXN3O00409 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC21.44■■□□□ 1.02
FOXN3O00409 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC21.44■■□□□ 1.02
FOXN3O00409 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
FOXN3O00409 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
FOXN3O00409 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
FOXN3O00409 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
FOXN3O00409 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
FOXN3O00409 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.44■■□□□ 1.02
FOXN3O00409 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
FOXN3O00409 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
FOXN3O00409 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
FOXN3O00409 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
FOXN3O00409 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
FOXN3O00409 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC21.43■■□□□ 1.02
FOXN3O00409 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
FOXN3O00409 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
FOXN3O00409 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
FOXN3O00409 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC21.43■■□□□ 1.02
FOXN3O00409 AC083906.2-201ENST00000511578 360 ntBASIC21.43■■□□□ 1.02
FOXN3O00409 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC21.43■■□□□ 1.02
FOXN3O00409 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC21.43■■□□□ 1.02
FOXN3O00409 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
FOXN3O00409 KRT8P20-201ENST00000423953 1409 ntBASIC21.43■■□□□ 1.02
FOXN3O00409 TMEM179-206ENST00000616017 1645 ntBASIC21.43■■□□□ 1.02
FOXN3O00409 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
FOXN3O00409 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
FOXN3O00409 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
FOXN3O00409 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
FOXN3O00409 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC21.43■■□□□ 1.02
FOXN3O00409 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
FOXN3O00409 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
FOXN3O00409 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
FOXN3O00409 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
FOXN3O00409 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
FOXN3O00409 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
FOXN3O00409 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
FOXN3O00409 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
FOXN3O00409 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
FOXN3O00409 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
FOXN3O00409 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
FOXN3O00409 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
FOXN3O00409 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
FOXN3O00409 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC21.42■■□□□ 1.02
FOXN3O00409 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
FOXN3O00409 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
FOXN3O00409 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
FOXN3O00409 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
FOXN3O00409 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
FOXN3O00409 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
FOXN3O00409 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
FOXN3O00409 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
FOXN3O00409 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
FOXN3O00409 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
FOXN3O00409 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC21.41■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms