Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AF127577.3-201ENST00000430391 781 ntTSL 2 BASIC6.44□□□□□ -1.38
NKX3-1Q99801 AC073115.1-201ENST00000436056 532 ntTSL 4 BASIC6.44□□□□□ -1.38
NKX3-1Q99801 LINC02474-202ENST00000441160 1148 ntTSL 5 BASIC6.44□□□□□ -1.38
NKX3-1Q99801 RPL4P2-201ENST00000447259 1282 ntBASIC6.44□□□□□ -1.38
NKX3-1Q99801 RPL5P9-201ENST00000448118 886 ntBASIC6.44□□□□□ -1.38
NKX3-1Q99801 AC096543.2-201ENST00000449140 859 ntTSL 3 BASIC6.44□□□□□ -1.38
NKX3-1Q99801 AC234771.3-201ENST00000454984 622 ntBASIC6.44□□□□□ -1.38
NKX3-1Q99801 AC002368.1-201ENST00000456981 388 ntTSL 3 BASIC6.44□□□□□ -1.38
NKX3-1Q99801 PA2G4P4-201ENST00000473864 1182 ntBASIC6.44□□□□□ -1.38
NKX3-1Q99801 AC084871.2-201ENST00000503355 464 ntBASIC6.44□□□□□ -1.38
NKX3-1Q99801 AC146944.2-201ENST00000504546 1073 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
NKX3-1Q99801 AC139495.1-201ENST00000510264 1073 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
NKX3-1Q99801 LINC02200-203ENST00000513687 541 ntTSL 3 BASIC6.44□□□□□ -1.38
NKX3-1Q99801 LINC01591-202ENST00000522279 1240 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
NKX3-1Q99801 AP000873.4-201ENST00000528133 905 ntTSL 3 BASIC6.44□□□□□ -1.38
NKX3-1Q99801 AL136088.1-201ENST00000531002 541 ntTSL 4 BASIC6.44□□□□□ -1.38
NKX3-1Q99801 GSTM3-206ENST00000540225 678 ntTSL 5 BASIC6.44□□□□□ -1.38
NKX3-1Q99801 AC013283.1-201ENST00000557282 492 ntBASIC6.44□□□□□ -1.38
NKX3-1Q99801 RN7SL14P-201ENST00000579715 298 ntBASIC6.44□□□□□ -1.38
NKX3-1Q99801 MIR3689C-201ENST00000581239 72 ntBASIC6.44□□□□□ -1.38
NKX3-1Q99801 RPL35AP25-201ENST00000584631 330 ntBASIC6.44□□□□□ -1.38
NKX3-1Q99801 LINC00674-202ENST00000590734 160 ntBASIC6.44□□□□□ -1.38
NKX3-1Q99801 HNF4A-AS1-202ENST00000609152 413 ntTSL 3 BASIC6.44□□□□□ -1.38
NKX3-1Q99801 RN7SL3-201ENST00000610674 299 ntBASIC6.44□□□□□ -1.38
NKX3-1Q99801 AC244196.3-201ENST00000614171 374 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
NKX3-1Q99801 CRYAB-216ENST00000616970 977 ntAPPRIS P1 TSL 2 BASIC6.44□□□□□ -1.38
NKX3-1Q99801 MIAT_exon1.1-201ENST00000617016 135 ntBASIC6.44□□□□□ -1.38
NKX3-1Q99801 CT45A9-202ENST00000620704 1010 ntAPPRIS P1 TSL 5 BASIC6.44□□□□□ -1.38
NKX3-1Q99801 AL353608.4-201ENST00000624487 1188 ntBASIC6.44□□□□□ -1.38
NKX3-1Q99801 AL390036.1-203ENST00000635340 894 ntTSL 5 BASIC6.44□□□□□ -1.38
NKX3-1Q99801 MFSD8-234ENST00000641503 1082 ntBASIC6.44□□□□□ -1.38
NKX3-1Q99801 AL450423.1-201ENST00000615176 1857 ntTSL 2 BASIC6.44□□□□□ -1.38
NKX3-1Q99801 PGRMC2-202ENST00000394276 2858 ntTSL 2 BASIC6.44□□□□□ -1.38
NKX3-1Q99801 PDE4DIP-204ENST00000369351 4922 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
NKX3-1Q99801 OR1C1-201ENST00000408896 1307 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
NKX3-1Q99801 BIN2P2-201ENST00000503900 1303 ntBASIC6.44□□□□□ -1.38
NKX3-1Q99801 LCP1-201ENST00000323076 3787 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
NKX3-1Q99801 DLC1-215ENST00000520226 3556 ntTSL 2 BASIC6.44□□□□□ -1.38
NKX3-1Q99801 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
NKX3-1Q99801 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
NKX3-1Q99801 FANCL-203ENST00000403295 1576 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
NKX3-1Q99801 AL450327.1-201ENST00000430931 2632 ntTSL 5 BASIC6.44□□□□□ -1.38
NKX3-1Q99801 MEPE-204ENST00000497649 2226 ntAPPRIS ALT2 TSL 5 BASIC6.44□□□□□ -1.38
NKX3-1Q99801 TBCCD1-203ENST00000424280 3058 ntAPPRIS P1 TSL 5 BASIC6.44□□□□□ -1.38
NKX3-1Q99801 SLC17A8-201ENST00000323346 3983 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
NKX3-1Q99801 IL5RA-207ENST00000438560 2252 ntAPPRIS ALT2 TSL 2 BASIC6.43□□□□□ -1.38
NKX3-1Q99801 WDR89-204ENST00000620954 2935 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
NKX3-1Q99801 LUZP1-203ENST00000418342 8421 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.38
NKX3-1Q99801 TIAL1-205ENST00000436547 1401 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
NKX3-1Q99801 ADH7-202ENST00000437033 2516 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
NKX3-1Q99801 HABP2-203ENST00000542051 2972 ntAPPRIS ALT2 TSL 2 BASIC6.43□□□□□ -1.38
NKX3-1Q99801 NEK11-201ENST00000356918 1874 ntAPPRIS ALT2 TSL 5 BASIC6.43□□□□□ -1.38
NKX3-1Q99801 AC106712.1-201ENST00000483840 1888 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
NKX3-1Q99801 CCDC152-201ENST00000361970 3431 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
NKX3-1Q99801 ADI1-202ENST00000382093 3870 ntTSL 2 BASIC6.43□□□□□ -1.38
NKX3-1Q99801 NT5C3A-201ENST00000242210 1670 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
NKX3-1Q99801 GABPB2-201ENST00000368916 1680 ntAPPRIS ALT2 TSL 5 BASIC6.43□□□□□ -1.38
NKX3-1Q99801 IFI44-201ENST00000370747 1687 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
NKX3-1Q99801 CDC73-204ENST00000635846 3987 ntTSL 5 BASIC6.43□□□□□ -1.38
NKX3-1Q99801 BVES-AS1-202ENST00000369122 1716 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
NKX3-1Q99801 SPATA45-201ENST00000332912 506 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
NKX3-1Q99801 PLGLB2-201ENST00000359481 1173 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
NKX3-1Q99801 MSRB1P1-201ENST00000396851 354 ntBASIC6.43□□□□□ -1.38
NKX3-1Q99801 PCNAP3-201ENST00000397222 778 ntBASIC6.43□□□□□ -1.38
NKX3-1Q99801 MORN2-202ENST00000409077 465 ntTSL 5 BASIC6.43□□□□□ -1.38
NKX3-1Q99801 AL590730.1-202ENST00000418875 321 ntTSL 2 BASIC6.43□□□□□ -1.38
NKX3-1Q99801 AC064875.1-203ENST00000422996 582 ntTSL 4 BASIC6.43□□□□□ -1.38
NKX3-1Q99801 LINC00460-201ENST00000435024 631 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
NKX3-1Q99801 LINC00350-201ENST00000438640 422 ntTSL 5 BASIC6.43□□□□□ -1.38
NKX3-1Q99801 AL137027.1-201ENST00000440358 444 ntTSL 2 BASIC6.43□□□□□ -1.38
NKX3-1Q99801 AP003774.3-201ENST00000457725 985 ntTSL 2 BASIC6.43□□□□□ -1.38
NKX3-1Q99801 RN7SL180P-201ENST00000466769 294 ntBASIC6.43□□□□□ -1.38
NKX3-1Q99801 ABHD10-204ENST00000494817 801 ntTSL 3 BASIC6.43□□□□□ -1.38
NKX3-1Q99801 AC079768.1-201ENST00000503181 711 ntBASIC6.43□□□□□ -1.38
NKX3-1Q99801 NTAN1P2-201ENST00000515730 940 ntBASIC6.43□□□□□ -1.38
NKX3-1Q99801 C11orf65-203ENST00000525729 1263 ntTSL 2 BASIC6.43□□□□□ -1.38
NKX3-1Q99801 CRYAB-203ENST00000525823 915 ntTSL 2 BASIC6.43□□□□□ -1.38
NKX3-1Q99801 LINC01493-202ENST00000533575 581 ntTSL 4 BASIC6.43□□□□□ -1.38
NKX3-1Q99801 MS4A12-205ENST00000537076 1019 ntTSL 5 BASIC6.43□□□□□ -1.38
NKX3-1Q99801 LINC02384-207ENST00000542875 551 ntTSL 4 BASIC6.43□□□□□ -1.38
NKX3-1Q99801 AL132712.1-201ENST00000555967 582 ntTSL 4 BASIC6.43□□□□□ -1.38
NKX3-1Q99801 AC027796.5-201ENST00000573568 560 ntTSL 5 BASIC6.43□□□□□ -1.38
NKX3-1Q99801 AC124283.2-201ENST00000575085 318 ntTSL 3 BASIC6.43□□□□□ -1.38
NKX3-1Q99801 DLGAP1-AS3-201ENST00000577649 1258 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
NKX3-1Q99801 AL121985.1-203ENST00000588034 556 ntTSL 4 BASIC6.43□□□□□ -1.38
NKX3-1Q99801 AC074135.1-201ENST00000594318 581 ntTSL 4 BASIC6.43□□□□□ -1.38
NKX3-1Q99801 AC010615.2-205ENST00000599993 929 ntTSL 2 BASIC6.43□□□□□ -1.38
NKX3-1Q99801 AC004852.1-201ENST00000605206 154 ntBASIC6.43□□□□□ -1.38
NKX3-1Q99801 AP004247.4-201ENST00000608484 942 ntBASIC6.43□□□□□ -1.38
NKX3-1Q99801 AC020910.4-201ENST00000612269 540 ntBASIC6.43□□□□□ -1.38
NKX3-1Q99801 RPSAP68-201ENST00000625020 438 ntBASIC6.43□□□□□ -1.38
NKX3-1Q99801 TSHZ2-205ENST00000626626 670 ntBASIC6.43□□□□□ -1.38
NKX3-1Q99801 ZBTB20-AS5-203ENST00000628886 819 ntTSL 5 BASIC6.43□□□□□ -1.38
NKX3-1Q99801 AC073488.8-201ENST00000631952 757 ntBASIC6.43□□□□□ -1.38
NKX3-1Q99801 ZNF652-201ENST00000362063 5988 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
NKX3-1Q99801 DDX58-202ENST00000379883 4353 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
NKX3-1Q99801 FGA-201ENST00000302053 3678 ntAPPRIS P1 TSL 2 BASIC6.43□□□□□ -1.38
NKX3-1Q99801 SORBS1-203ENST00000354106 3015 ntAPPRIS ALT2 TSL 5 BASIC6.43□□□□□ -1.38
NKX3-1Q99801 PFKFB1-203ENST00000545676 1591 ntTSL 2 BASIC6.43□□□□□ -1.38
NKX3-1Q99801 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 85.1 ms