Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC21.59■■□□□ 1.05
SIX2Q9NPC8 CROCCP5-201ENST00000436658 830 ntBASIC21.59■■□□□ 1.05
SIX2Q9NPC8 GLI3-203ENST00000437480 451 ntTSL 2 BASIC21.59■■□□□ 1.05
SIX2Q9NPC8 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC21.59■■□□□ 1.05
SIX2Q9NPC8 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SIX2Q9NPC8 AL031963.3-201ENST00000606441 850 ntBASIC21.59■■□□□ 1.05
SIX2Q9NPC8 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
SIX2Q9NPC8 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC21.59■■□□□ 1.05
SIX2Q9NPC8 AL158211.5-201ENST00000623583 2518 ntBASIC21.59■■□□□ 1.05
SIX2Q9NPC8 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SIX2Q9NPC8 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SIX2Q9NPC8 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SIX2Q9NPC8 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
SIX2Q9NPC8 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC21.58■■□□□ 1.05
SIX2Q9NPC8 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC21.58■■□□□ 1.05
SIX2Q9NPC8 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SIX2Q9NPC8 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC21.58■■□□□ 1.05
SIX2Q9NPC8 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
SIX2Q9NPC8 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SIX2Q9NPC8 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
SIX2Q9NPC8 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SIX2Q9NPC8 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC21.58■■□□□ 1.05
SIX2Q9NPC8 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC21.58■■□□□ 1.05
SIX2Q9NPC8 C2orf69P4-201ENST00000565394 541 ntBASIC21.58■■□□□ 1.05
SIX2Q9NPC8 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC21.58■■□□□ 1.05
SIX2Q9NPC8 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC21.58■■□□□ 1.05
SIX2Q9NPC8 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC21.58■■□□□ 1.05
SIX2Q9NPC8 AL589743.5-201ENST00000616611 1050 ntBASIC21.58■■□□□ 1.05
SIX2Q9NPC8 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC21.58■■□□□ 1.04
SIX2Q9NPC8 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
SIX2Q9NPC8 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
SIX2Q9NPC8 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
SIX2Q9NPC8 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC21.58■■□□□ 1.04
SIX2Q9NPC8 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
SIX2Q9NPC8 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
SIX2Q9NPC8 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC21.57■■□□□ 1.04
SIX2Q9NPC8 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC21.57■■□□□ 1.04
SIX2Q9NPC8 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
SIX2Q9NPC8 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
SIX2Q9NPC8 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SIX2Q9NPC8 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
SIX2Q9NPC8 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SIX2Q9NPC8 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC21.57■■□□□ 1.04
SIX2Q9NPC8 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SIX2Q9NPC8 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC21.57■■□□□ 1.04
SIX2Q9NPC8 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC21.57■■□□□ 1.04
SIX2Q9NPC8 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC21.57■■□□□ 1.04
SIX2Q9NPC8 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SIX2Q9NPC8 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC21.57■■□□□ 1.04
SIX2Q9NPC8 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SIX2Q9NPC8 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC21.57■■□□□ 1.04
SIX2Q9NPC8 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SIX2Q9NPC8 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SIX2Q9NPC8 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SIX2Q9NPC8 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SIX2Q9NPC8 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
SIX2Q9NPC8 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC21.56■■□□□ 1.04
SIX2Q9NPC8 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SIX2Q9NPC8 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
SIX2Q9NPC8 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SIX2Q9NPC8 MIR663A-201ENST00000385250 93 ntBASIC21.56■■□□□ 1.04
SIX2Q9NPC8 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SIX2Q9NPC8 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
SIX2Q9NPC8 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
SIX2Q9NPC8 AC026185.1-201ENST00000445748 174 ntBASIC21.56■■□□□ 1.04
SIX2Q9NPC8 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SIX2Q9NPC8 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC21.56■■□□□ 1.04
SIX2Q9NPC8 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SIX2Q9NPC8 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
SIX2Q9NPC8 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.56■■□□□ 1.04
SIX2Q9NPC8 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
SIX2Q9NPC8 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SIX2Q9NPC8 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
SIX2Q9NPC8 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC21.55■■□□□ 1.04
SIX2Q9NPC8 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SIX2Q9NPC8 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC21.55■■□□□ 1.04
SIX2Q9NPC8 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC21.55■■□□□ 1.04
SIX2Q9NPC8 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SIX2Q9NPC8 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SIX2Q9NPC8 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SIX2Q9NPC8 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC21.55■■□□□ 1.04
SIX2Q9NPC8 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC21.55■■□□□ 1.04
SIX2Q9NPC8 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SIX2Q9NPC8 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SIX2Q9NPC8 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC21.55■■□□□ 1.04
SIX2Q9NPC8 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SIX2Q9NPC8 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SIX2Q9NPC8 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
SIX2Q9NPC8 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC21.54■■□□□ 1.04
SIX2Q9NPC8 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SIX2Q9NPC8 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SIX2Q9NPC8 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
SIX2Q9NPC8 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC21.54■■□□□ 1.04
SIX2Q9NPC8 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SIX2Q9NPC8 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SIX2Q9NPC8 ISCU-212ENST00000547005 795 ntTSL 3 BASIC21.54■■□□□ 1.04
SIX2Q9NPC8 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC21.54■■□□□ 1.04
SIX2Q9NPC8 BRWD1-AS2-201ENST00000603064 1028 ntBASIC21.54■■□□□ 1.04
SIX2Q9NPC8 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SIX2Q9NPC8 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC21.54■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms