Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL25A1Q9BXS0 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL25A1Q9BXS0 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL25A1Q9BXS0 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL25A1Q9BXS0 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC20.57■□□□□ 0.88
COL25A1Q9BXS0 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC20.57■□□□□ 0.88
COL25A1Q9BXS0 AL691403.2-201ENST00000618460 490 ntBASIC20.57■□□□□ 0.88
COL25A1Q9BXS0 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL25A1Q9BXS0 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL25A1Q9BXS0 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL25A1Q9BXS0 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.56■□□□□ 0.88
COL25A1Q9BXS0 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL25A1Q9BXS0 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL25A1Q9BXS0 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
COL25A1Q9BXS0 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL25A1Q9BXS0 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC20.56■□□□□ 0.88
COL25A1Q9BXS0 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL25A1Q9BXS0 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.56■□□□□ 0.88
COL25A1Q9BXS0 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL25A1Q9BXS0 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.56■□□□□ 0.88
COL25A1Q9BXS0 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL25A1Q9BXS0 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL25A1Q9BXS0 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL25A1Q9BXS0 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC20.55■□□□□ 0.88
COL25A1Q9BXS0 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC20.55■□□□□ 0.88
COL25A1Q9BXS0 AC092338.2-201ENST00000568827 1415 ntBASIC20.55■□□□□ 0.88
COL25A1Q9BXS0 AC003102.1-202ENST00000563394 1796 ntBASIC20.55■□□□□ 0.88
COL25A1Q9BXS0 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL25A1Q9BXS0 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC20.55■□□□□ 0.88
COL25A1Q9BXS0 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
COL25A1Q9BXS0 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
COL25A1Q9BXS0 BX842568.4-201ENST00000421222 227 ntBASIC20.55■□□□□ 0.88
COL25A1Q9BXS0 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC20.55■□□□□ 0.88
COL25A1Q9BXS0 AC140113.2-201ENST00000604370 208 ntBASIC20.55■□□□□ 0.88
COL25A1Q9BXS0 AL390719.2-201ENST00000606993 987 ntBASIC20.55■□□□□ 0.88
COL25A1Q9BXS0 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL25A1Q9BXS0 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL25A1Q9BXS0 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL25A1Q9BXS0 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL25A1Q9BXS0 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
COL25A1Q9BXS0 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC20.54■□□□□ 0.88
COL25A1Q9BXS0 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL25A1Q9BXS0 HTR5BP-201ENST00000430851 1154 ntBASIC20.54■□□□□ 0.88
COL25A1Q9BXS0 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
COL25A1Q9BXS0 HLA-J-203ENST00000494367 1087 ntBASIC20.54■□□□□ 0.88
COL25A1Q9BXS0 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC20.54■□□□□ 0.88
COL25A1Q9BXS0 KRT18P58-201ENST00000527480 1120 ntBASIC20.54■□□□□ 0.88
COL25A1Q9BXS0 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
COL25A1Q9BXS0 AL356652.1-201ENST00000615962 565 ntBASIC20.54■□□□□ 0.88
COL25A1Q9BXS0 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL25A1Q9BXS0 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL25A1Q9BXS0 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC20.54■□□□□ 0.88
COL25A1Q9BXS0 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC20.54■□□□□ 0.88
COL25A1Q9BXS0 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
COL25A1Q9BXS0 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL25A1Q9BXS0 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL25A1Q9BXS0 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
COL25A1Q9BXS0 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.53■□□□□ 0.88
COL25A1Q9BXS0 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL25A1Q9BXS0 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.53■□□□□ 0.88
COL25A1Q9BXS0 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL25A1Q9BXS0 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL25A1Q9BXS0 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL25A1Q9BXS0 TSSC2-201ENST00000450217 709 ntBASIC20.53■□□□□ 0.88
COL25A1Q9BXS0 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL25A1Q9BXS0 ABR-217ENST00000572441 563 ntTSL 4 BASIC20.53■□□□□ 0.88
COL25A1Q9BXS0 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC20.53■□□□□ 0.88
COL25A1Q9BXS0 AP000692.2-201ENST00000608391 879 ntBASIC20.53■□□□□ 0.88
COL25A1Q9BXS0 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC20.53■□□□□ 0.88
COL25A1Q9BXS0 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC20.53■□□□□ 0.88
COL25A1Q9BXS0 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
COL25A1Q9BXS0 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL25A1Q9BXS0 AL139125.2-201ENST00000623134 1869 ntBASIC20.53■□□□□ 0.88
COL25A1Q9BXS0 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL25A1Q9BXS0 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
COL25A1Q9BXS0 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL25A1Q9BXS0 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
COL25A1Q9BXS0 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL25A1Q9BXS0 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC20.53■□□□□ 0.88
COL25A1Q9BXS0 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.52■□□□□ 0.88
COL25A1Q9BXS0 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL25A1Q9BXS0 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC20.52■□□□□ 0.88
COL25A1Q9BXS0 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL25A1Q9BXS0 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
COL25A1Q9BXS0 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL25A1Q9BXS0 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC20.52■□□□□ 0.88
COL25A1Q9BXS0 GXYLT1P6-201ENST00000456472 1187 ntBASIC20.52■□□□□ 0.88
COL25A1Q9BXS0 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC20.52■□□□□ 0.88
COL25A1Q9BXS0 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC20.52■□□□□ 0.88
COL25A1Q9BXS0 AC091304.2-201ENST00000564639 760 ntBASIC20.52■□□□□ 0.88
COL25A1Q9BXS0 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
COL25A1Q9BXS0 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC20.52■□□□□ 0.88
COL25A1Q9BXS0 AC239800.4-201ENST00000603712 296 ntBASIC20.52■□□□□ 0.88
COL25A1Q9BXS0 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL25A1Q9BXS0 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
COL25A1Q9BXS0 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC20.52■□□□□ 0.87
COL25A1Q9BXS0 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.87
COL25A1Q9BXS0 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
COL25A1Q9BXS0 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL25A1Q9BXS0 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms