Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC012557.3-201ENST00000626439 255 ntBASIC6.61□□□□□ -1.35
NKX3-1Q99801 AC073488.5-201ENST00000631993 754 ntBASIC6.61□□□□□ -1.35
NKX3-1Q99801 ZNF107-206ENST00000620827 5685 ntAPPRIS P4 TSL 4 BASIC6.61□□□□□ -1.35
NKX3-1Q99801 EVI2A-203ENST00000462804 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
NKX3-1Q99801 KCNIP4-202ENST00000382148 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC6.61□□□□□ -1.35
NKX3-1Q99801 SPATA31A1-201ENST00000377647 4256 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
NKX3-1Q99801 SPATA31A7-206ENST00000619167 4256 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
NKX3-1Q99801 SYNPR-204ENST00000460711 2383 ntTSL 2 BASIC6.61□□□□□ -1.35
NKX3-1Q99801 AL353795.1-201ENST00000439134 1775 ntBASIC6.61□□□□□ -1.35
NKX3-1Q99801 LINC00861-201ENST00000500989 5330 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
NKX3-1Q99801 CD300E-201ENST00000392619 3501 ntAPPRIS P2 TSL 1 (best) BASIC6.61□□□□□ -1.35
NKX3-1Q99801 ZNF3-203ENST00000303915 3473 ntAPPRIS P1 TSL 5 BASIC6.61□□□□□ -1.35
NKX3-1Q99801 TRIM6-202ENST00000380097 3403 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
NKX3-1Q99801 DCAF10-201ENST00000242323 7393 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
NKX3-1Q99801 TMX2-201ENST00000278422 1631 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
NKX3-1Q99801 CPM-202ENST00000546373 2116 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
NKX3-1Q99801 ZG16-201ENST00000400752 3132 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
NKX3-1Q99801 FCGR3A-201ENST00000367967 2086 ntAPPRIS P1 TSL 3 BASIC6.61□□□□□ -1.35
NKX3-1Q99801 FAM49B-226ENST00000523509 1968 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
NKX3-1Q99801 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
NKX3-1Q99801 CDYLP1-201ENST00000419017 1458 ntBASIC6.6□□□□□ -1.35
NKX3-1Q99801 VN1R1-201ENST00000321039 2353 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 KAT6B-204ENST00000372724 7106 ntAPPRIS ALT2 TSL 5 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 NUMB-211ENST00000554521 1406 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
NKX3-1Q99801 TLR3-202ENST00000504367 2310 ntTSL 2 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 SYNE1-213ENST00000448038 6001 ntTSL 5 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 MEF2C-221ENST00000514015 2772 ntTSL 5 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 GLRX-202ENST00000379979 1366 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
NKX3-1Q99801 AC106800.1-201ENST00000501221 1362 ntBASIC6.6□□□□□ -1.35
NKX3-1Q99801 DRP2-204ENST00000538510 6852 ntAPPRIS P3 TSL 2 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 ZNF300P1-201ENST00000356555 1822 ntBASIC6.6□□□□□ -1.35
NKX3-1Q99801 CDON-202ENST00000392693 9138 ntAPPRIS ALT2 TSL 1 (best) BASIC6.6□□□□□ -1.35
NKX3-1Q99801 OR52K1-202ENST00000641528 5456 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 MEF2C-244ENST00000636998 5936 ntTSL 5 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 ZSCAN16-201ENST00000340487 1328 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
NKX3-1Q99801 AL512604.2-201ENST00000426946 1314 ntTSL 5 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 PLXNA4-201ENST00000321063 13061 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 CDY1-202ENST00000361963 2177 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 UBE2D3-204ENST00000349311 838 ntAPPRIS ALT1 TSL 2 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 DYNLRB1-202ENST00000357156 675 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
NKX3-1Q99801 Y_RNA.209-201ENST00000364156 111 ntBASIC6.6□□□□□ -1.35
NKX3-1Q99801 FANK1-201ENST00000368689 522 ntTSL 3 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 FAM49A-201ENST00000381323 4670 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
NKX3-1Q99801 S100A13-202ENST00000392622 547 ntAPPRIS P1 TSL 2 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 AL035698.1-201ENST00000405812 564 ntBASIC6.6□□□□□ -1.35
NKX3-1Q99801 RBMY2FP-202ENST00000420346 1263 ntBASIC6.6□□□□□ -1.35
NKX3-1Q99801 PGAM1P3-201ENST00000420790 565 ntBASIC6.6□□□□□ -1.35
NKX3-1Q99801 BRWD1-AS1-201ENST00000423274 691 ntTSL 4 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 OR10J1-201ENST00000423932 1090 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 TRBV10-2-201ENST00000426318 395 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 ATP13A4-AS1-201ENST00000426459 795 ntTSL 3 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 AC097468.2-201ENST00000429343 553 ntTSL 4 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 PIP5K1P2-201ENST00000437005 1120 ntBASIC6.6□□□□□ -1.35
NKX3-1Q99801 LINC01320-202ENST00000453774 1205 ntTSL 3 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 AL590326.1-201ENST00000460857 334 ntBASIC6.6□□□□□ -1.35
NKX3-1Q99801 SSU72P8-201ENST00000473520 585 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 RN7SL272P-201ENST00000487762 289 ntBASIC6.6□□□□□ -1.35
NKX3-1Q99801 RN7SL608P-201ENST00000492377 279 ntBASIC6.6□□□□□ -1.35
NKX3-1Q99801 RPL7AP2-201ENST00000496515 740 ntBASIC6.6□□□□□ -1.35
NKX3-1Q99801 LINC00992-201ENST00000504107 617 ntTSL 2 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 AC083902.1-201ENST00000508578 359 ntTSL 5 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 SCARNA20.1-201ENST00000516009 138 ntBASIC6.6□□□□□ -1.35
NKX3-1Q99801 AP000911.4-201ENST00000532272 516 ntTSL 4 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 AC078950.1-204ENST00000540635 523 ntTSL 3 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 AC055736.1-201ENST00000548135 629 ntTSL 3 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 AC060809.1-201ENST00000559211 564 ntTSL 4 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 FAM192A-206ENST00000564108 1055 ntAPPRIS P1 TSL 3 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 TTN-AS1-210ENST00000578746 677 ntTSL 3 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 MIR4682-201ENST00000580643 80 ntBASIC6.6□□□□□ -1.35
NKX3-1Q99801 C17orf80-208ENST00000582793 531 ntTSL 2 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 ZNF83-210ENST00000597161 509 ntTSL 4 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 LINC01198-208ENST00000599175 560 ntTSL 5 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 MARK3P1-201ENST00000604796 643 ntBASIC6.6□□□□□ -1.35
NKX3-1Q99801 AC068631.1-255ENST00000608173 588 ntTSL 5 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 STARD13-AS-224ENST00000608496 787 ntTSL 5 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 5S_rRNA.20-201ENST00000612104 118 ntBASIC6.6□□□□□ -1.35
NKX3-1Q99801 CACNB2-214ENST00000612743 597 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
NKX3-1Q99801 NUDT13-208ENST00000617744 928 ntTSL 5 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 AC027348.2-201ENST00000624375 642 ntBASIC6.6□□□□□ -1.35
NKX3-1Q99801 DOCK9-203ENST00000376460 7549 ntAPPRIS P2 TSL 5 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 SPATA31B1P-201ENST00000434692 4016 ntBASIC6.6□□□□□ -1.35
NKX3-1Q99801 ZNF268-201ENST00000228289 3543 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
NKX3-1Q99801 QTRT2-212ENST00000485050 3844 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
NKX3-1Q99801 GLRA3-201ENST00000274093 8770 ntAPPRIS P3 TSL 1 (best) BASIC6.6□□□□□ -1.35
NKX3-1Q99801 NRXN3-207ENST00000554719 4156 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
NKX3-1Q99801 AKAP5-201ENST00000320636 2601 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
NKX3-1Q99801 CDC42-201ENST00000315554 1452 ntAPPRIS P5 TSL 1 (best) BASIC6.6□□□□□ -1.35
NKX3-1Q99801 AC090132.1-201ENST00000524071 1480 ntBASIC6.6□□□□□ -1.35
NKX3-1Q99801 TPD52-202ENST00000379097 2563 ntAPPRIS P3 TSL 1 (best) BASIC6.6□□□□□ -1.35
NKX3-1Q99801 TPD52-204ENST00000517427 2596 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
NKX3-1Q99801 TXNIP-204ENST00000582401 2926 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
NKX3-1Q99801 THSD7B-202ENST00000409968 6111 ntAPPRIS P2 TSL 5 BASIC6.59□□□□□ -1.35
NKX3-1Q99801 KIF18A-201ENST00000263181 3568 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
NKX3-1Q99801 UQCRC2-202ENST00000561553 1415 ntTSL 5 BASIC6.59□□□□□ -1.35
NKX3-1Q99801 MFSD6-201ENST00000281416 4608 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
NKX3-1Q99801 GLRA4-201ENST00000372617 1795 ntAPPRIS P1 TSL 5 BASIC6.59□□□□□ -1.35
NKX3-1Q99801 MAPK10-365ENST00000641902 3825 ntBASIC6.59□□□□□ -1.35
NKX3-1Q99801 EOGT-201ENST00000295571 4138 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
NKX3-1Q99801 TSHZ2-201ENST00000329613 3093 ntTSL 4 BASIC6.59□□□□□ -1.35
NKX3-1Q99801 UGT3A1-207ENST00000625798 3097 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 134.4 ms