Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC21.03■□□□□ 0.96
LIG3P49916 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC21.03■□□□□ 0.96
LIG3P49916 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LIG3P49916 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC21.03■□□□□ 0.96
LIG3P49916 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
LIG3P49916 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LIG3P49916 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LIG3P49916 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC21.03■□□□□ 0.96
LIG3P49916 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC21.03■□□□□ 0.96
LIG3P49916 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
LIG3P49916 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC21.03■□□□□ 0.96
LIG3P49916 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC21.03■□□□□ 0.96
LIG3P49916 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC21.03■□□□□ 0.96
LIG3P49916 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC21.03■□□□□ 0.96
LIG3P49916 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC21.03■□□□□ 0.96
LIG3P49916 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC21.03■□□□□ 0.96
LIG3P49916 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
LIG3P49916 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
LIG3P49916 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC21.03■□□□□ 0.96
LIG3P49916 AC004408.2-201ENST00000623613 2777 ntBASIC21.02■□□□□ 0.96
LIG3P49916 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LIG3P49916 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
LIG3P49916 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LIG3P49916 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
LIG3P49916 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
LIG3P49916 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LIG3P49916 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC21.02■□□□□ 0.96
LIG3P49916 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
LIG3P49916 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC21.02■□□□□ 0.96
LIG3P49916 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC21.02■□□□□ 0.96
LIG3P49916 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC21.02■□□□□ 0.96
LIG3P49916 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC21.02■□□□□ 0.96
LIG3P49916 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LIG3P49916 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
LIG3P49916 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
LIG3P49916 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
LIG3P49916 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LIG3P49916 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
LIG3P49916 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LIG3P49916 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC21.02■□□□□ 0.96
LIG3P49916 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LIG3P49916 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.95
LIG3P49916 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
LIG3P49916 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIG3P49916 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIG3P49916 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIG3P49916 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIG3P49916 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIG3P49916 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIG3P49916 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC21.01■□□□□ 0.95
LIG3P49916 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIG3P49916 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIG3P49916 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
LIG3P49916 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
LIG3P49916 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC21.01■□□□□ 0.95
LIG3P49916 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIG3P49916 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
LIG3P49916 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC21.01■□□□□ 0.95
LIG3P49916 CROCCP5-201ENST00000436658 830 ntBASIC21.01■□□□□ 0.95
LIG3P49916 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIG3P49916 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC21.01■□□□□ 0.95
LIG3P49916 TK2-208ENST00000545043 1120 ntTSL 2 BASIC21.01■□□□□ 0.95
LIG3P49916 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC21.01■□□□□ 0.95
LIG3P49916 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC21.01■□□□□ 0.95
LIG3P49916 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC21.01■□□□□ 0.95
LIG3P49916 MAZ-216ENST00000616501 991 ntTSL 5 BASIC21.01■□□□□ 0.95
LIG3P49916 AC231657.2-201ENST00000624556 255 ntBASIC21.01■□□□□ 0.95
LIG3P49916 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
LIG3P49916 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
LIG3P49916 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
LIG3P49916 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIG3P49916 KRT16P2-201ENST00000414673 1423 ntBASIC21.01■□□□□ 0.95
LIG3P49916 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIG3P49916 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC21.01■□□□□ 0.95
LIG3P49916 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
LIG3P49916 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIG3P49916 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
LIG3P49916 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
LIG3P49916 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
LIG3P49916 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC21■□□□□ 0.95
LIG3P49916 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LIG3P49916 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LIG3P49916 AC007322.1-201ENST00000426983 750 ntBASIC21■□□□□ 0.95
LIG3P49916 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC21■□□□□ 0.95
LIG3P49916 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
LIG3P49916 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
LIG3P49916 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
LIG3P49916 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21■□□□□ 0.95
LIG3P49916 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC21■□□□□ 0.95
LIG3P49916 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LIG3P49916 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
LIG3P49916 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC21■□□□□ 0.95
LIG3P49916 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIG3P49916 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIG3P49916 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LIG3P49916 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.99■□□□□ 0.95
LIG3P49916 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIG3P49916 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIG3P49916 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.99■□□□□ 0.95
LIG3P49916 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms