Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC16.33■□□□□ 0.2
CDX1P47902 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CDX1P47902 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
CDX1P47902 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC16.33■□□□□ 0.2
CDX1P47902 AC006970.2-201ENST00000450065 779 ntBASIC16.33■□□□□ 0.2
CDX1P47902 SLC7A5P2-201ENST00000553010 536 ntBASIC16.33■□□□□ 0.2
CDX1P47902 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC16.33■□□□□ 0.2
CDX1P47902 AC010536.3-201ENST00000620306 533 ntBASIC16.33■□□□□ 0.2
CDX1P47902 PARP1-210ENST00000629232 477 ntTSL 5 BASIC16.33■□□□□ 0.2
CDX1P47902 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CDX1P47902 KRT16P2-201ENST00000414673 1423 ntBASIC16.33■□□□□ 0.2
CDX1P47902 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CDX1P47902 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CDX1P47902 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CDX1P47902 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CDX1P47902 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC16.33■□□□□ 0.2
CDX1P47902 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
CDX1P47902 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CDX1P47902 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
CDX1P47902 GOLGA2P6-201ENST00000340929 2049 ntBASIC16.33■□□□□ 0.2
CDX1P47902 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CDX1P47902 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CDX1P47902 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
CDX1P47902 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CDX1P47902 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC16.32■□□□□ 0.2
CDX1P47902 LTB4R2-202ENST00000528054 3092 ntBASIC16.32■□□□□ 0.2
CDX1P47902 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDX1P47902 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDX1P47902 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDX1P47902 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDX1P47902 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC16.32■□□□□ 0.2
CDX1P47902 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CDX1P47902 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDX1P47902 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDX1P47902 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDX1P47902 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC16.32■□□□□ 0.2
CDX1P47902 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC16.32■□□□□ 0.2
CDX1P47902 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC16.32■□□□□ 0.2
CDX1P47902 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC16.32■□□□□ 0.2
CDX1P47902 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDX1P47902 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC16.32■□□□□ 0.2
CDX1P47902 BID-204ENST00000399767 2129 ntTSL 2 BASIC16.32■□□□□ 0.2
CDX1P47902 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CDX1P47902 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CDX1P47902 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDX1P47902 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC16.32■□□□□ 0.2
CDX1P47902 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC16.32■□□□□ 0.2
CDX1P47902 PPP1R14BP3-201ENST00000509033 445 ntBASIC16.32■□□□□ 0.2
CDX1P47902 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CDX1P47902 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC16.32■□□□□ 0.2
CDX1P47902 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CDX1P47902 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CDX1P47902 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDX1P47902 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDX1P47902 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDX1P47902 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC16.32■□□□□ 0.2
CDX1P47902 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC16.32■□□□□ 0.2
CDX1P47902 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC16.32■□□□□ 0.2
CDX1P47902 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC16.32■□□□□ 0.2
CDX1P47902 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CDX1P47902 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDX1P47902 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDX1P47902 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC16.32■□□□□ 0.2
CDX1P47902 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDX1P47902 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDX1P47902 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC16.31■□□□□ 0.2
CDX1P47902 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC16.31■□□□□ 0.2
CDX1P47902 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDX1P47902 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDX1P47902 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDX1P47902 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDX1P47902 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
CDX1P47902 CROCCP5-201ENST00000436658 830 ntBASIC16.31■□□□□ 0.2
CDX1P47902 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC16.31■□□□□ 0.2
CDX1P47902 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC16.31■□□□□ 0.2
CDX1P47902 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC16.31■□□□□ 0.2
CDX1P47902 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CDX1P47902 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDX1P47902 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
CDX1P47902 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDX1P47902 AC013268.1-206ENST00000638368 961 ntBASIC16.31■□□□□ 0.2
CDX1P47902 AC112229.1-201ENST00000639295 961 ntBASIC16.31■□□□□ 0.2
CDX1P47902 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDX1P47902 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC16.31■□□□□ 0.2
CDX1P47902 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CDX1P47902 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC16.31■□□□□ 0.2
CDX1P47902 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDX1P47902 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC16.31■□□□□ 0.2
CDX1P47902 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CDX1P47902 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDX1P47902 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDX1P47902 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
CDX1P47902 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDX1P47902 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
CDX1P47902 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDX1P47902 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDX1P47902 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC16.3■□□□□ 0.2
CDX1P47902 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDX1P47902 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDX1P47902 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms