Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
FOXN3O00409 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC21.58■■□□□ 1.05
FOXN3O00409 DLX3-202ENST00000512495 834 ntTSL 2 BASIC21.58■■□□□ 1.05
FOXN3O00409 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC21.58■■□□□ 1.05
FOXN3O00409 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC21.58■■□□□ 1.05
FOXN3O00409 VPS53-216ENST00000574029 585 ntTSL 4 BASIC21.58■■□□□ 1.05
FOXN3O00409 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC21.58■■□□□ 1.05
FOXN3O00409 AL050303.2-201ENST00000619798 666 ntBASIC21.58■■□□□ 1.05
FOXN3O00409 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC21.58■■□□□ 1.05
FOXN3O00409 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC21.58■■□□□ 1.04
FOXN3O00409 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
FOXN3O00409 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
FOXN3O00409 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC21.57■■□□□ 1.04
FOXN3O00409 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
FOXN3O00409 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
FOXN3O00409 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
FOXN3O00409 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
FOXN3O00409 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
FOXN3O00409 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC21.57■■□□□ 1.04
FOXN3O00409 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
FOXN3O00409 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC21.57■■□□□ 1.04
FOXN3O00409 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
FOXN3O00409 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
FOXN3O00409 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
FOXN3O00409 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
FOXN3O00409 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
FOXN3O00409 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
FOXN3O00409 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
FOXN3O00409 KRT17P1-201ENST00000399211 1546 ntBASIC21.56■■□□□ 1.04
FOXN3O00409 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC21.56■■□□□ 1.04
FOXN3O00409 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21.56■■□□□ 1.04
FOXN3O00409 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
FOXN3O00409 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC21.56■■□□□ 1.04
FOXN3O00409 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC21.56■■□□□ 1.04
FOXN3O00409 AC133552.2-202ENST00000575694 574 ntBASIC21.56■■□□□ 1.04
FOXN3O00409 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC21.56■■□□□ 1.04
FOXN3O00409 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC21.56■■□□□ 1.04
FOXN3O00409 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
FOXN3O00409 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
FOXN3O00409 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC21.56■■□□□ 1.04
FOXN3O00409 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
FOXN3O00409 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC21.56■■□□□ 1.04
FOXN3O00409 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
FOXN3O00409 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
FOXN3O00409 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
FOXN3O00409 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
FOXN3O00409 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
FOXN3O00409 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
FOXN3O00409 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
FOXN3O00409 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC21.55■■□□□ 1.04
FOXN3O00409 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC21.55■■□□□ 1.04
FOXN3O00409 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC21.55■■□□□ 1.04
FOXN3O00409 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
FOXN3O00409 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
FOXN3O00409 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
FOXN3O00409 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
FOXN3O00409 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC21.55■■□□□ 1.04
FOXN3O00409 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
FOXN3O00409 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
FOXN3O00409 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
FOXN3O00409 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC21.55■■□□□ 1.04
FOXN3O00409 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC21.54■■□□□ 1.04
FOXN3O00409 LBX2-AS1-202ENST00000603175 2083 ntBASIC21.54■■□□□ 1.04
FOXN3O00409 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC21.54■■□□□ 1.04
FOXN3O00409 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC21.54■■□□□ 1.04
FOXN3O00409 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
FOXN3O00409 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
FOXN3O00409 AC026185.1-201ENST00000445748 174 ntBASIC21.54■■□□□ 1.04
FOXN3O00409 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
FOXN3O00409 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC21.54■■□□□ 1.04
FOXN3O00409 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
FOXN3O00409 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
FOXN3O00409 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
FOXN3O00409 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
FOXN3O00409 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC21.53■■□□□ 1.04
FOXN3O00409 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC21.53■■□□□ 1.04
FOXN3O00409 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC21.53■■□□□ 1.04
FOXN3O00409 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
FOXN3O00409 CROCCP5-201ENST00000436658 830 ntBASIC21.53■■□□□ 1.04
FOXN3O00409 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC21.53■■□□□ 1.04
FOXN3O00409 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
FOXN3O00409 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
FOXN3O00409 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
FOXN3O00409 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC21.53■■□□□ 1.04
FOXN3O00409 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
FOXN3O00409 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
FOXN3O00409 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
FOXN3O00409 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC21.52■■□□□ 1.04
FOXN3O00409 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
FOXN3O00409 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC21.52■■□□□ 1.04
FOXN3O00409 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
FOXN3O00409 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
FOXN3O00409 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
FOXN3O00409 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
FOXN3O00409 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
FOXN3O00409 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
FOXN3O00409 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
FOXN3O00409 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
FOXN3O00409 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
FOXN3O00409 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms