Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
HMGA1P17096 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
HMGA1P17096 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
HMGA1P17096 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
HMGA1P17096 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
HMGA1P17096 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HMGA1P17096 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
HMGA1P17096 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HMGA1P17096 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC21.03■□□□□ 0.96
HMGA1P17096 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC21.03■□□□□ 0.96
HMGA1P17096 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC21.03■□□□□ 0.96
HMGA1P17096 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
HMGA1P17096 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC21.03■□□□□ 0.96
HMGA1P17096 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC21.03■□□□□ 0.96
HMGA1P17096 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.03■□□□□ 0.96
HMGA1P17096 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
HMGA1P17096 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC21.03■□□□□ 0.96
HMGA1P17096 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
HMGA1P17096 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC21.03■□□□□ 0.96
HMGA1P17096 H19-201ENST00000411754 1788 ntTSL 5 BASIC21.02■□□□□ 0.96
HMGA1P17096 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC21.02■□□□□ 0.96
HMGA1P17096 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
HMGA1P17096 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
HMGA1P17096 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HMGA1P17096 RPS2P55-201ENST00000397318 883 ntBASIC21.02■□□□□ 0.96
HMGA1P17096 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC21.02■□□□□ 0.96
HMGA1P17096 AC012618.2-201ENST00000428058 849 ntBASIC21.02■□□□□ 0.96
HMGA1P17096 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HMGA1P17096 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC21.02■□□□□ 0.96
HMGA1P17096 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
HMGA1P17096 AC107956.1-201ENST00000494359 873 ntBASIC21.02■□□□□ 0.96
HMGA1P17096 AC233702.5-201ENST00000584107 538 ntBASIC21.02■□□□□ 0.96
HMGA1P17096 Six3os1_6.1-201ENST00000620790 196 ntBASIC21.02■□□□□ 0.96
HMGA1P17096 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HMGA1P17096 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HMGA1P17096 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.95
HMGA1P17096 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
HMGA1P17096 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
HMGA1P17096 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
HMGA1P17096 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HMGA1P17096 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
HMGA1P17096 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HMGA1P17096 MDFI-202ENST00000373050 809 ntTSL 2 BASIC21.01■□□□□ 0.95
HMGA1P17096 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
HMGA1P17096 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HMGA1P17096 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
HMGA1P17096 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC21.01■□□□□ 0.95
HMGA1P17096 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HMGA1P17096 REXO2-216ENST00000544196 452 ntTSL 3 BASIC21.01■□□□□ 0.95
HMGA1P17096 ARL16-209ENST00000573715 763 ntTSL 3 BASIC21.01■□□□□ 0.95
HMGA1P17096 ARL16-211ENST00000576135 694 ntTSL 3 BASIC21.01■□□□□ 0.95
HMGA1P17096 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC21.01■□□□□ 0.95
HMGA1P17096 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HMGA1P17096 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
HMGA1P17096 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC21.01■□□□□ 0.95
HMGA1P17096 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HMGA1P17096 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC21.01■□□□□ 0.95
HMGA1P17096 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
HMGA1P17096 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC21.01■□□□□ 0.95
HMGA1P17096 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
HMGA1P17096 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
HMGA1P17096 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HMGA1P17096 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HMGA1P17096 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HMGA1P17096 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HMGA1P17096 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC21.01■□□□□ 0.95
HMGA1P17096 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
HMGA1P17096 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC21.01■□□□□ 0.95
HMGA1P17096 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HMGA1P17096 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC21■□□□□ 0.95
HMGA1P17096 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21■□□□□ 0.95
HMGA1P17096 AC005229.4-201ENST00000610085 2198 ntBASIC21■□□□□ 0.95
HMGA1P17096 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC21■□□□□ 0.95
HMGA1P17096 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HMGA1P17096 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC21■□□□□ 0.95
HMGA1P17096 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
HMGA1P17096 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HMGA1P17096 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HMGA1P17096 SNORA78-201ENST00000459373 127 ntBASIC21■□□□□ 0.95
HMGA1P17096 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC21■□□□□ 0.95
HMGA1P17096 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC21■□□□□ 0.95
HMGA1P17096 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC21■□□□□ 0.95
HMGA1P17096 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC21■□□□□ 0.95
HMGA1P17096 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
HMGA1P17096 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21■□□□□ 0.95
HMGA1P17096 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
HMGA1P17096 AC007225.1-201ENST00000566331 1836 ntBASIC20.99■□□□□ 0.95
HMGA1P17096 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGA1P17096 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGA1P17096 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGA1P17096 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
HMGA1P17096 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGA1P17096 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.99■□□□□ 0.95
HMGA1P17096 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HMGA1P17096 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC20.99■□□□□ 0.95
HMGA1P17096 PRKY-204ENST00000533551 1019 ntBASIC20.99■□□□□ 0.95
HMGA1P17096 MAX-217ENST00000557277 728 ntTSL 3 BASIC20.99■□□□□ 0.95
HMGA1P17096 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGA1P17096 AL031963.3-201ENST00000606441 850 ntBASIC20.99■□□□□ 0.95
HMGA1P17096 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms